Epilithonimonas zeae: KI430_00615
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Entry
KI430_00615 CDS
T08226
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eze
Epilithonimonas zeae
Pathway
eze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI430_00615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eze03019
]
KI430_00615
Enzymes [BR:
eze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KI430_00615
Messenger RNA biogenesis [BR:
eze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI430_00615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UQB68981
LinkDB
All DBs
Position
167288..168640
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AA seq
450 aa
AA seq
DB search
MNKTTFADFDLPEKILDVLADLDLFEPTPIQEKSLKPILSGRDVMGIAQTGTGKTLAYLL
PVLKTWKYNKSGNPTVLVLVPTRELVVQVTEVLEKLTKNITARVIGVYGGKNINTQKLLF
NDGCDILVGTPGRVMDLSIDNAISLREVNKLIIDEFDEMLNLGFRPQLTHIFEMMKEKRQ
NILFSATMTEALDEILNEYFASPIEISLARSGTPLEKIAQTAIPVDNFNTKLNLLIHLLK
TEDNLEKILIFANNKKHADLIFEKLNVEFPDEFGVIHSNKSQNFRLRVMQEFTNEELRGV
ITTDIMARGLDIPDISHVFNFEVPEVPEQYIHRIGRTGRADKDGIAVTFYTKKEEAQLLD
IELLMDKEINKTEFPEEVTISKVKIASEQDEVKMKFLTTAKLNEGESAFHEKKDKNKKIN
LGGPSKRKAPKKFGANRAQQKQKSKAKRKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaccacttttgcagatttcgatttaccggaaaagattcttgatgttctagcc
gatttagatttatttgaaccgacgccgattcaggaaaaaagtttaaaaccgattctttca
ggtcgcgatgtgatgggaattgcacagaccggaacgggaaaaactttagcttatttgctt
cctgttctcaaaacttggaaatataacaaatccgggaatcctacagttttggttttagtt
cctacaagagaattggtagttcaggttacagaagttttagaaaaactgacgaagaatatc
actgcaagagttatcggagtttatggtgggaaaaacatcaatacgcagaaattgttgttc
aatgatggctgcgatattttggtcggaacaccaggtcgcgtgatggatttgtcgattgat
aatgcgatttctcttagagaagttaataaattaatcattgacgagttcgacgaaatgctg
aatctaggtttccgtccacaactgactcatatcttcgaaatgatgaaagagaaaagacaa
aatatccttttttctgcaacaatgaccgaagctttagacgaaatattaaatgaatatttt
gcttctccaatcgagatttctttagcaaggtcgggaacacctttggagaaaattgctcag
actgcaattccggttgataacttcaatacaaaacttaatttgctaattcatcttctgaaa
actgaggataatcttgagaagattctaattttcgcaaataataaaaaacatgcagattta
attttcgaaaaactaaatgttgaatttcccgatgaatttggtgtcattcactctaacaaa
tctcagaatttcagattaagagtaatgcaggaattcacgaatgaagaattgcgtggcgtg
attacaacagatattatggcgagaggtttggatattccggatatttcgcatgttttcaac
ttcgaagtgcctgaagttcctgagcaatacatccacagaattggtagaaccggtcgtgcg
gacaaagacggaatcgcagtgactttctacaccaaaaaagaagaagctcaacttcttgac
atcgaattgttgatggataaagaaatcaataaaactgaattcccagaggaagtaaccatc
tcaaaagtcaaaatcgcgtctgaacaggatgaagtaaaaatgaaattcctgaccactgca
aaacttaacgaaggcgaatctgctttccacgagaaaaaagataaaaacaagaaaatcaat
cttggcggcccaagcaagcgaaaagcgcctaagaaatttggagcgaacagagcgcaacaa
aagcaaaagtcaaaagctaagagaaagaaataa
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