Epilithonimonas zeae: KI430_02845
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Entry
KI430_02845 CDS
T08226
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
eze
Epilithonimonas zeae
Pathway
eze03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KI430_02845 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eze03400
]
KI430_02845 (ligD)
Enzymes [BR:
eze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KI430_02845 (ligD)
DNA repair and recombination proteins [BR:
eze03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KI430_02845 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UQB69383
LinkDB
All DBs
Position
complement(690442..692304)
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AA seq
620 aa
AA seq
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MLCKVSDKAFDDKDWAFEIKWDGYRAIADLSKDEIRLYSRNGIDFSQKFKKVTNSLKLQE
HNMVLDGEIVAYDDKGKPNFQWLQQIGDNPNLALTFQVFDLLWLNGHSTENLSYLQRKEL
LKDALVENEILKYSDHILENGKEFFQAAKDLGLEGIVAKKTESLYKENLRSSEWLKIKIH
KSDEAIICGFTDPKGSRKKFGALILGKYLNGEMVFCGHTGGGFNEKSLSEMYDKMQPLIT
SKSVFKITPKTNTKATWINPELIAEIKFTELTKDHVYRHPIFLRLRDDIEPKDVEFSSEN
QLKKEIMKKAEPKKRAGKEDLIKKIGKQELKLTNQNKIYFPDDDVTKGDVIDYYQSISKY
ILPHLKNRPQSMNRYPNGIDGMSFFQKDASEETPDWIETQKVFSESSDKYINYIICNDKE
TLAYLNNLGCIELNIWTSKIQKADNPDYLVLDLDPSEKNTFEDVIETAQAVKEVLDLAEI
EGYPKTSGSSGIHIYIPMNAKYSYDQVKDFGHLLMQMVQQKLPDLTTLERSLQKRNKNKI
YLDYLQNRRGQTLASVYSLRPKKGATVSMPLEWEEVKNGLKLTDFTIYNSLERLKEKGDL
FKPILGKGVDMLKVIKKLDA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgctttgcaaagtctccgacaaagcctttgatgataaagactgggcgttcgaaatcaaa
tgggacggttatcgtgctattgcagatttgagcaaagacgaaatccgattgtactccaga
aacggaatcgatttttctcagaaatttaaaaaagttaccaattcgctcaagttgcaggaa
cacaatatggttcttgatggggaaattgttgcttatgatgacaaaggaaagcctaatttc
caatggcttcaacaaattggtgacaatccaaatctggccttgacttttcaggtttttgat
ttgttatggcttaacggccattcaaccgaaaatctttcttatctgcaaagaaaagaatta
ttaaaagacgctttggtggaaaatgaaatcctcaaatacagtgaccatattttggaaaac
ggaaaagaatttttccaagccgcaaaagatttgggattggaggggattgttgcaaaaaaa
accgaaagtctttacaaagaaaacctaagaagttcggaatggctgaaaatcaaaatccat
aaaagtgatgaagccattatttgtggatttaccgacccaaaaggctcacggaaaaaattt
ggcgctttgattttaggaaaatatctcaatggtgaaatggttttttgtggtcataccgga
ggtggttttaatgaaaagtcactttctgaaatgtatgacaagatgcaaccgcttatcact
tcgaaatctgttttcaaaatcactccaaaaaccaataccaaagcgacttggataaacccc
gaattaattgccgaaattaaatttacagaactcaccaaagaccacgtttatcgtcatccc
atttttcttaggcttcgtgatgatattgaaccaaaagatgttgaattcagttctgaaaat
caattaaaaaaagaaattatgaaaaaagctgaacctaaaaaaagagcaggaaaagaggat
ttgataaagaaaattggaaaacaggaattgaagctgacgaatcaaaataaaatctatttt
cccgacgatgacgtgacaaaaggtgatgtgattgattattatcaaagcatttcaaaatac
attcttccacatttgaaaaatcggccacaatctatgaaccgctatcccaatggaatcgat
ggaatgagttttttccaaaaagatgcttctgaagaaacacccgattggatagaaacacaa
aaagttttctcagaaagttcagataaatatatcaattacatcatctgtaatgataaagaa
accttagcctatctcaacaatctcggatgtattgagttgaatatctggacaagtaaaatc
caaaaagcagacaatccggattacttggttcttgaccttgatccttctgaaaaaaatact
tttgaagacgtaatagaaacggctcaggctgtgaaagaagttttggatttagcagaaatt
gaaggttatcccaaaacttcaggaagttctggaatccacatttatattcctatgaatgcc
aaatattcttatgatcaagtcaaggattttggacaccttctgatgcaaatggttcagcag
aaattaccggatttgacaacactggaaagaagtctacagaaacgcaataagaataaaatc
tatctcgattatctccaaaaccgtcgtgggcaaactttggcaagtgtttacagcttgaga
ccaaaaaaaggagcaaccgtttcgatgcctttggaatgggaagaagtaaaaaatggattg
aaactcactgattttactatttataattctttggaaagattgaaagaaaaaggtgatctt
tttaaacccattttgggaaaaggtgttgatatgttgaaagtgattaagaaactggatgct
taa
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