Epilithonimonas zeae: KI430_08420
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Entry
KI430_08420 CDS
T08226
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eze
Epilithonimonas zeae
Pathway
eze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI430_08420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eze03019
]
KI430_08420
Enzymes [BR:
eze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KI430_08420
Messenger RNA biogenesis [BR:
eze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI430_08420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
AAA_19
UvrD-helicase
Cas3-like_C_2
AAA_22
P-loop_SecA
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
UQB70435
LinkDB
All DBs
Position
1893911..1895161
Genome browser
AA seq
416 aa
AA seq
DB search
MNFEELGLIKPILDALKAQGYEQPTPIQEKAIPSILQKKDLLGSAQTGTGKTAAFAIPIL
QNLSEKDQHRNQIKALILTPTRELAIQIEENFQAYGKHLKLKSLVIFGGVKQHAQEQQLK
RGVDILIATPGRLLDFISQGIIKLHHLQIFVLDEADRMLDMGFVHDVKKILKIIPAKRQN
LFFSATMPKEIANLASEILVNPVKVEVAPVSSTADTIQQSIYFVDNSNKTDLLIHLLEDP
KLDQVLVFSRTKHGADKIARKLHQSKISAEAIHGNKSQNARQNALSNFKSKKTRVLVATD
IAARGIDIDELKYVVNYELSDVSETYVHRIGRTGRAGSEGTSFSFVDGLDLANLRSTEKL
IGKKIPVVKDHPYHTDNLVEQKRDSNNKPFTPRPKPQAKTEIGFKKPKNKGFFRKK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttcgaagaattaggcttgattaagccaatattagatgcattaaaagcacaaggc
tacgaacagccgacaccaatacaagaaaaagcaatcccatctatcttacagaaaaaagat
cttttgggaagcgcacagacagggacaggaaaaactgctgcgtttgcgattcctattcta
caaaatctttcagaaaaagaccaacatagaaaccaaatcaaagcactgattcttacacca
acaagagaattagcgatccaaattgaagagaatttccaggcttacggaaagcacttgaaa
ttaaaatcattggtgatctttggtggtgtaaaacaacacgcgcaggaacagcaacttaaa
agaggtgtagacatcttgattgctactccgggaagattgttggattttatttctcaaggg
attatcaaacttcatcacctacagatttttgttttggatgaggctgacagaatgttggat
atgggtttcgtacacgatgtgaagaaaatcctgaaaataattcccgccaaaagacaaaac
cttttcttttctgcaactatgccgaaagaaattgccaatttagcttctgagatcttggta
aatcctgtaaaagtagaagttgctccggtttcttccactgcagacacaattcagcaaagt
atttattttgttgataattctaataaaaccgatttgttaattcaccttttggaagaccca
aaattggatcaggttttggtattttccagaactaaacacggtgcggacaaaattgccaga
aaacttcatcaatccaaaatttctgctgaagcgatacacggaaacaaatctcagaatgca
agacaaaacgcactatccaacttcaaatcaaaaaaaacaagagttctggttgcgacagat
attgcagccagaggaattgacatcgatgagctgaaatatgttgtgaattatgaattatcc
gatgtttctgagacctatgttcacagaatcggacgaactggtagagcaggctcagaagga
acttctttttcatttgttgatggattggatttggctaatcttagaagtacagaaaaactg
attggcaagaaaatccctgttgtaaaagatcatccttatcatacagataatctcgtagaa
cagaaaagagacagtaataataagccttttactccgagaccaaaacctcaggcaaaaact
gaaatcggttttaagaaacctaaaaataaaggatttttcagaaagaaataa
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