Epilithonimonas zeae: KI430_08475
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Entry
KI430_08475 CDS
T08226
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eze
Epilithonimonas zeae
Pathway
eze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI430_08475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eze03019
]
KI430_08475
03009 Ribosome biogenesis [BR:
eze03009
]
KI430_08475
Enzymes [BR:
eze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KI430_08475
Messenger RNA biogenesis [BR:
eze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI430_08475
Ribosome biogenesis [BR:
eze03009
]
Prokaryotic type
rRNA helicases
KI430_08475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UQB70446
LinkDB
All DBs
Position
complement(1904399..1906093)
Genome browser
AA seq
564 aa
AA seq
DB search
MNLFTESNLSAEVLQAIGDLGFVEPTEIQKQTIPFISTDTRDLIALAATGTGKTAAFSLP
ILDMIDDNSRKIQLLVLCPTRELCLQITKDIKNYTKYLKNIKTTAVYGGSSIMDQIRSLR
DKPQIIVGTPGRVIDMIGRKALDFSEVQWVVLDEADEMLSMGFKDDLETILSETPETKQT
FLFSATMNKEVERISKNYLTNPHRISVGSINAVKKNIKHEYYVVGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEIADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSE
TKIDIEEKKIPTGKDIIKAQVGGVFEKLLTEHEDIFEFDDSLIPDLSSFTKEELVHQLLQ
FQLKDLATYYKDRNDIQQQEFNTRGDDRGSRRERGRERERNGEPRERRERGERNDRGGRP
RKKNEDMVRFFFNLGKRDQLKKVDMLDIINKATSKSKKRADIGNIEILDKFSFFEIEKSF
KNEVMNGLTEMKFRGKEMRAEVAN
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaatccaatcttagcgctgaagttcttcaggcgattggcgacctc
ggcttcgtagagccgacagaaatccaaaaacagactattccttttatctctacagatact
cgcgatcttatcgcacttgcggcaacaggaacaggcaaaacagcagcattttcgcttccg
attttggatatgatagacgacaacagtcgtaaaatccaattattggtgctttgccctact
cgtgaactttgccttcagattaccaaagacatcaaaaattatacgaaatacctaaaaaac
atcaagactacagcagtctatggtggtagcagtattatggatcaaatccgatctttgaga
gacaaaccgcaaatcattgtgggaactccgggacgtgtgatcgatatgatcggcagaaaa
gctttagatttttctgaagtacaatgggttgttttggatgaggctgatgaaatgttatca
atgggtttcaaagatgatttggaaactattcttagcgaaactccagaaaccaagcagact
tttttgttctctgcaacgatgaacaaagaagtggagcgtatttctaaaaattatttgacc
aatcctcacagaatttctgttggatctatcaatgcagttaagaaaaacatcaagcacgaa
tattatgtggttggctatagacagaaaaaagaagctttgaagcgattgattgatgccaat
ccgaatcaatattcaattatcttttgcagaaccagaatggaaactcaggaaattgcagac
ttcttgatgcagaatggttatgcagcagatgcacttcacggtgatctttctcaagcgcag
agagatacagtgatgaagaaattcagattgaaaaacattgatatcttggttgctacagac
gttgcagctagaggtttggatgtggattctttgacacacgttattcatttttctttaccg
gatgatccagaggttttcgttcacagaagtggaagaacaggacgtgctggtaaagacgga
atttctatggctcttataaaaccagaagaatctagaaaattgaagcaaatcaaatctgaa
actaaaatcgatattgaggagaaaaaaatcccgactggaaaagatattatcaaagctcag
gttggcggtgttttcgaaaaattattgacagaacacgaagacatattcgagtttgatgat
tctttgattcctgatctttccagctttactaaagaagaattggttcatcagttactacaa
ttccaactgaaagatcttgcgacttattataaagacagaaacgatatccaacagcaagaa
ttcaatactagaggagacgacagaggtagcagaagagaaagaggaagagagcgtgaaaga
aacggagagcctagagaaagaagagaacgtggtgagagaaatgacagaggaggaagacca
agaaaaaagaatgaagatatggtaagattcttctttaaccttgggaaaagagaccaattg
aaaaaagtggatatgcttgacatcattaataaagcgacttcaaaatccaaaaaaagagct
gatattggcaatattgagatcttggataagttcagctttttcgaaatagaaaagtctttc
aagaatgaagttatgaatggattaactgagatgaaatttcggggaaaagaaatgcgcgcc
gaagttgcaaattaa
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