Epilithonimonas zeae: KI430_16750
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Entry
KI430_16750 CDS
T08226
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eze
Epilithonimonas zeae
Pathway
eze03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eze00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KI430_16750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eze03021
]
KI430_16750 (rpoC)
03400 DNA repair and recombination proteins [BR:
eze03400
]
KI430_16750 (rpoC)
Enzymes [BR:
eze01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KI430_16750 (rpoC)
Transcription machinery [BR:
eze03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KI430_16750 (rpoC)
DNA repair and recombination proteins [BR:
eze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KI430_16750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Biotin_lipoyl
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UQB68636
LinkDB
All DBs
Position
3654997..3659262
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKTSRFNKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHIGLVVPVAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKADGSDFDDKEFLTEEEYLDVLETLPIENQYLDD
SDPNKFVAKMGAEAVEELLKRIDLDSLSFDLRHKAHNESSKQRRTEALKRLNVVEALRGA
NTRMINKPEWMIMRVLPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPSLQLHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILEGVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEAHSTDEKKIQ
GEGLAFYSPEEVEIAYAEGKVSLNAKVRCRLPVKENGEIVTRLLNTTVGRILFNQIVPAQ
VGYVDELLTKKSLRNVIGQILADTDFPTTVKFLDDMKNLGYANAFKGGLSFSLGDIVIPA
EKKGMIATAVENVDEIKANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKSDQGGF
NSVFMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSVGAEIIENPIVANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITEDDCGTLRGTEITALKKNDDIVE
KISDRILGRVSLHNVYHPETDELLANADELIVEAVAKQIEDAGIEAVEVRSPLTCETKKG
ICAKCYGRNLATGKGIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTASNISENPSIVAK
RDGIVEMDEVRTIKSEGEEGQTADIVVSRSTEFRLVADNEARTPIMVANVPYGSELFVKP
GDKVKKGDLIAKWDAYNAVIIAETSGKVEYEDIIQGISFVLEIDEQTGFEEKVISESRNK
KAVPTLKVVDAKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGEIKKYLVKLSNQILVQEN
DFVYAGGPLSDGSITPDDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKFDFLEENNRVFGLKVVTEPGDSKVFKAGQMITARELRDE
NSKLKREDQALVQVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGK
IDFLTGLKENVIVGHRIPAGTGLKDYQNVIVGSRKEFEDIN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaaacaagtcgatttaataaaatcactattggtttagcttcacca
gaatctattcttcaggaatcgagaggggaagttcttaagccagaaacgatcaactatcgt
acgcacaaaccggaaagagatggtttgttctgcgagaagatcttcggtcctgtaaaagac
tacgagtgtgcttgtggaaaatacaaaagaatccgttacaaagggattgtttgtgataga
tgtggtgtagaagttacagagaaaaaagtacgtagagaaagaatcggacacattggtttg
gttgttcctgtggcgcacatctggtatttccgttctttgccaaacaaaattggttattta
ttaggtatcccgtccaagaaattggatatgattatctattacgagagatatgttgtgatc
caacaaggtattgctaagaaagcagacggttcagatttcgatgacaaagaattccttaca
gaagaagaatatttggatgttttggaaacacttcctatcgagaaccaatatcttgatgat
tctgacccgaacaaattcgtagcgaaaatgggagcagaagctgttgaagaattgttgaag
agaatcgacctagattctttatcattcgatcttcgtcacaaagctcacaacgagtcttct
aaacaaagaagaacagaagcgcttaagagattgaacgttgtagaagcattgagaggtgct
aatacaagaatgatcaataagccagaatggatgattatgagagttcttcctattatacca
ccagaactaagaccattggttccattggatggaggacgtttcgcaacttccgatcttaat
gatctttacagaagggttattatcagaaacaaccgtttgaagagactattggagatcaaa
gctccggaagtaatcttaagaaacgagaagcgtatgcttcaggaatctgtagattcatta
ttcgataatacaagaaaatcttctgctgtaaaatctgaatcaaacagaccattgaaatct
ctttcagattcattgaaaggtaagcaaggtcgtttccgtcagaacttattaggaaaaagg
gtagattactcagctcgttcggttattgttgtaggtcctagcttacaattgcacgagtgt
ggtcttccaaaagatatggctgcagagctttacaaaccgtttatcattagaaaactaatc
gagagaggaattgtaaaaactgtaaaatcagctaaaagaatcatcgatagaaaagagcct
gtagtttatgatatcctagaaggtgtgatgaaaggtcaccctgttcttttgaacagagca
cctactttgcacagattaggtatccaagcattccagcctaagatgatcgaaggtaaagcg
atccaacttcacccattggtaacaacggctttcaacgccgattttgatggggatcagatg
gcggttcacttaccattaggtccagaagctattttggaagctcaactattgatgctaggt
tctcagaatatcttgaaccctgcgaatggttctccaattacggtaccatctcaggacatg
gttttgggtctgtattttatgaccaaagaagctcattctactgacgagaagaaaattcaa
ggtgaaggtcttgctttctattctccggaagaagtggaaattgcttatgcagaaggaaaa
gtttctcttaacgcaaaagtaagatgtcgtcttccagtaaaagagaatggagaaatcgta
acaagattattgaacacaactgtaggaagaattttgttcaatcagattgtaccagcacaa
gttggatacgttgacgagttattgactaagaaatctcttagaaatgtaattggtcagatc
ttggcagatacagatttcccaactactgttaagttcttggatgatatgaaaaaccttgga
tatgcaaacgcattcaaaggaggtctttcattctctctgggagatatcgtaattcctgct
gagaaaaaaggaatgattgctacagcagtagaaaacgtagatgaaattaaggctaactat
aacatgggtcttattacagatacagagcgttataatcaggtaatcgacgtttggactaat
accaacgctggtcttacggaaatgattatgagtagaatgaagtctgaccaaggtggattc
aactctgtatttatgatgctagattctggtgcgaggggttctaaggagcagatccgtcag
ttatctggtatgagaggtttgatggcaaaaccacaaaaagctggttctgttggagctgag
attattgaaaacccgattgtcgcaaactttaaagaaggtttgtcaatcttggagtacttt
atctctacccacggtgctcgtaagggtcttgcggataccgctcttaaaactgccgatgct
ggttacttaactagaagattggtagacgttgcacaggatgttatcattacagaggatgat
tgtggaactttgagaggtacagaaattactgcacttaagaaaaatgatgatatcgttgaa
aaaatctctgacagaattcttggtagagtttctcttcacaacgtttatcacccagaaact
gatgagttgttggctaatgcagatgagttaatcgttgaagctgttgctaaacaaatagaa
gacgctggaatcgaagctgtagaagttcgttctccattaacttgtgaaaccaaaaaaggt
atctgtgcaaaatgttacggtcgtaaccttgcaacaggtaaaggaatccatatgggagaa
gctgtaggtgttatcgctgcacagtctattggtgagccgggaactcagttaacattgaga
actttccaccaagggggtactgcaagtaacatttcagaaaatccaagtatcgttgcaaaa
cgtgatggtattgttgagatggatgaggttagaacaattaagtctgaaggcgaagaagga
caaactgcggatatcgttgtgtcccgttcaacagaatttagattggttgctgataacgaa
gctagaacaccaatcatggttgcgaacgttccttatggttccgaactatttgtgaaacca
ggcgataaagtgaaaaaaggagatcttattgcaaaatgggatgcctataatgccgtaatc
attgcagaaacttctggtaaggtagagtatgaggatattatccaaggtatctctttcgta
ttggagattgatgagcagactggtttcgaagagaaagtaatctctgaatctagaaataaa
aaagcggttccaactttgaaggttgtagatgcaaaaggcgtagagcaaaaagcttacaac
ttaccggtaggcgcccacttgatggttaacgatggtgagaaaattaaggctggtaaagtc
ctaatcaagatcccaagaaaatctgcaaaagcaggggatatcaccggaggtcttccaaga
gttaccgaattattcgaagccagaaacccttcaaacccagctgtagttacagagattgat
ggtgtagtttcttacggtaaaatcaagagaggtaaccgtgagcttatcgttgaggctaaa
actggagaaatcaagaagtatttggttaaattatcaaaccagatcttggttcaggagaat
gacttcgtttatgctggtggtccactttcagacggttctatcacaccggacgatatctta
agaatcaaaggtccaactgcggttcaggaatatttggttaatgagattcaggaagtttac
cgtcttcaaggggtgaagattgatgacaaacacttcgagattattgttcgtcagatgatg
acaaaagtatcgattgtggatggaggagatactcagttcctggaaggagcattggagcac
aaattcgatttcttggaagagaacaacagagttttcggactgaaagttgttaccgagccg
ggagattctaaagtattcaaggcaggtcagatgattacagcaagagaacttagagatgag
aactcgaagcttaagagagaagatcaggctttggtacaagttagagaagcgcttcctgca
actgcaacacctgttttacaaggtattacaagagcagcgttacagacaaaatcatttatg
tctgcagcgtcattccaggaaacaactaaggttcttaacgaagcagcagtatctggaaaa
atcgacttcttgacaggtcttaaagaaaatgtaattgtaggacacagaatccctgcaggt
acaggtcttaaagattaccaaaacgtaatcgtaggttctagaaaagaattcgaagatatt
aactaa
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