Filifactor alocis: HMPREF0389_00097
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Entry
HMPREF0389_00097 CDS
T01663
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
faa
Filifactor alocis
Pathway
faa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
faa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0389_00097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
faa03019
]
HMPREF0389_00097
03009 Ribosome biogenesis [BR:
faa03009
]
HMPREF0389_00097
Enzymes [BR:
faa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMPREF0389_00097
Messenger RNA biogenesis [BR:
faa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0389_00097
Ribosome biogenesis [BR:
faa03009
]
Prokaryotic type
rRNA helicases
HMPREF0389_00097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
SMC_N
Motif
Other DBs
NCBI-ProteinID:
EFE28183
UniProt:
D6GR92
LinkDB
All DBs
Position
complement(608885..610504)
Genome browser
AA seq
539 aa
AA seq
DB search
MKKFTEFNISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPI
LDNILQNNNHQIQALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLKK
KVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSEERQTM
LFSATMPAEILSLSKKYLKNPEMIRVKNKTMTVDQIEQIYMKVKNADKSEVLSRILQLES
SKKAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQISMLIATDV
AARGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRDIERLRRIEKYA
KCKIKEESIPRYDKVKEKIIHQYIEGIRSQKNSGDLDFYFNLVSEMKQSGVNLEAFLAIM
MKNTLNLQNKEKIDYRAYERDRIRAITGQKKEKKSKKYSKERGMVRFELNIGRVDRVGPA
DIVSSVANRCKIPGKNIGAIDILSDVSYFDIKEEYAKIAEKHLKQVKIRGKKVTAKQMK
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatttacagaatttaatatttcaaaagagattcaaatggcattggagcagtta
ggttttgaggaagcaactatcattcaagaactggcgattcccattgcgacagaagggaaa
gatttgattggtcaatctcaaaccggtacgggaaaaacgtttgctttcggaatccctata
ttagacaacatattacaaaataataatcatcagattcaagcgttggttatttgtccgacg
agagagttggcagtccaagtttctaacgaatttgataaattaacggcttttactaaaatc
agaaatattgctgtctatggtggagaatatattgataagcagataaaaggattgaaaaag
aaagttcagattgttatcggaacaccgggaagaatattggatcacattgagagaaaaaca
ataaagctggatcatgtgcgctttgtggtactggatgaagctgacgagatgttggatatg
ggattcatagaagatattgaaaatattttgagagaaacaagtgaagaacgacaaacgatg
ttgttttcagctactatgcctgcagagatactgtctctttcaaaaaaatatttaaagaat
ccggaaatgattcgagtaaaaaataagacaatgacagtggatcaaattgaacaaatttat
atgaaagtgaagaatgcagataaatcggaagttttgagtcgtattttgcaactagagagc
tctaaaaaggctattattttttgtaatacaaaaaaaatggtggatgagttggttgtggat
atgcaaaacagaggttatgcagtagaagcgttgcatggtgatttgaaacaacaaaaaaga
gatatggtattgaaccgatttcgagaagggcaaatcagtatgttgattgcaacagatgtt
gcagcgaggggattggatattcgtgatgttgatttggtaatcaattatgatttgccgatt
gaagaagaacagtatgtgcacagaatcggtcgtacaggtcgtgccggtgcaagcggaaaa
tcttacagttttgcatatggtagagatatagaacgattgagaaggattgaaaagtatgca
aaatgtaagattaaagaagaatcgattcctcgttatgacaaagtaaaggaaaaaattatt
catcaatacattgaaggaattcgaagtcaaaaaaacagtggtgatttggatttttatttt
aatttagtttcagaaatgaaacaatccggtgtgaatttggaagcttttttggcaattatg
atgaaaaatactttgaatcttcaaaacaaggaaaagatagattatcgtgcttatgagaga
gataggattagggcaataaccggacagaaaaaggagaagaaatcaaaaaaatattccaaa
gaaagaggcatggtccgttttgaattgaacatcggtagggtagatagagtagggcctgca
gatatcgtatcttctgttgcaaaccgatgcaaaattccgggaaagaatatcggtgcgatt
gacattttgtctgatgtaagttattttgatatcaaggaagaatatgcaaagatagcagaa
aaacatttgaaacaagtaaaaatcagagggaaaaaagtgactgcgaaacaaatgaagtaa
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