Filifactor alocis: HMPREF0389_00114
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Entry
HMPREF0389_00114 CDS
T01663
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit, Gram-positive type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
faa
Filifactor alocis
Pathway
faa03030
DNA replication
faa03430
Mismatch repair
faa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
faa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0389_00114 (polC)
03430 Mismatch repair
HMPREF0389_00114 (polC)
03440 Homologous recombination
HMPREF0389_00114 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
faa03032
]
HMPREF0389_00114 (polC)
03400 DNA repair and recombination proteins [BR:
faa03400
]
HMPREF0389_00114 (polC)
Enzymes [BR:
faa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF0389_00114 (polC)
DNA replication proteins [BR:
faa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF0389_00114 (polC)
DNA repair and recombination proteins [BR:
faa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF0389_00114 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
HHH_6
Rv2179c-like
RNase_H_2
DEDDh_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
EFE28200
UniProt:
D6GRA9
LinkDB
All DBs
Position
complement(588814..593037)
Genome browser
AA seq
1407 aa
AA seq
DB search
MEVKSFFGEHHLNVTHIKYLKKSRTVVFFLELMHFLTESEIEKYEQDLSELLQGYVVVLS
VRYSNIIKNEEFWTNYQSNVKEYLFRKYPSLNGMKTNVTIEIDSEQKKLYCCVSQTFLHN
NLKNNKLDMVLAEKIQRELGIVMEVSFICNCSEYAIEHYQKQQEDYLEQFIQTMETKIAE
APKEQKTMEAVCMYGKNFSGEAVPLKTIRQAVEKIILEGKVFAFDKRQMKNQKYLYLFNI
TDQTDSISCKLFLKEDNLQLSDGDFVKILGNVTYDTYAQELVVMVSSMMPSKEEKRFDNC
ERKRVELHAHTSMSSMEGLLSAKELLGAAKEFGHKAIAITDDAVVQAFPDAMGSAKKTGI
KVLYGVEGHLVDDMSNILKEFNDKDLNQEFVVFDIETTGFSSINDAIIEIGAVKIKNREI
IDRFSEFVNPKREIPYHITELTSITNEMVCNEDTIEEVLPRFMEFSKDSVFVAHNSDFDT
SFIKENCKRLDLLYDRIAIDTVELSRALLTDLKRHKLNVVAKKLGISLENHHRAVDDAEA
TAQIFLKFLTMIEECGVTTLAEVNQKITKTNIDTIRDKSITIFAQNLVGLKNLYKLISFS
HIKHFYRIPRILKSELVEHREGLLIGTGGENGEIFGGVREEVERGVDPSVVDEKIKFYDF
AEVMPVSTYRSFFSARFDMNETDLRRINQRIYDAATQAGIMTVAVGNVHYLNPEDGIYRH
ILRYGQKKKDDRIDQALYYRTTQEMLDEFEYLGKEVAYEIVVKNTNDFADLIEEMLPVPE
GTFPPEIEGAKEDLREMCYEKAKRIYGNPLPEIVEKRLDRELSSIIGNGYAVMYIIAQKL
VTKSLRDGYLVGSRGSVGSSFAATMSDITEVNPLPPHYICENEDCKYSEFMESGAFGSGV
DMPNKLCPCCGRELKKDGFDIPFEVFLGFEGDKEPDIDLNFAGEYQPNAHKFVEDLFGEG
YVFRAGTIGTVAEKTAYGYVVKYLEENNLVANNAEKQRLQLGCTGIKRTSGQHPGGVMVC
PKNKDIYDFTPVQYPANDTKCGVITTHFDYHSISGRILKLDILGHDVPSIIRHLEDMTNV
VATEIPLDDERVMSIFTSTDAIDCDLSQIQCETGTLGIPEFGTRFVQHMLMDTNPHTFAE
LIRISGLSHGTDVWVNNAQDLVRSNTVTLKDVISTRDDIMNYLIQEGLPSKMSFKIMENV
RKGKGLTEEQEECMISHQVPNWYITSCKKIKYMFPKAHAVAYVMMSFRIAYFKVYHKEAF
YAACFSTKVDNFDVDLICRGKEAVMMAYQELKQKENNLTAKEMGFITVLELAYEMHQRGV
KMNHVDIYKSDSKKFYVLDNEILPPLLSIPGLGLTVAEKIKEEAGKSEFISLEDFRIRTK
ASKTVIETLRNHGCLQGLPETNQLSLF
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaaaatctttttttggagaacatcatttaaatgtcactcatataaaatatttg
aaaaaaagcagaacagtagtgttttttttagagctgatgcattttttgacggaatcagaa
atagagaagtatgaacaagacctatcagagttattgcaaggttatgttgttgttttgtcc
gtacgatattcaaatattataaaaaatgaagaattttggacaaactatcagtcaaatgtg
aaagagtacctctttagaaaatatccatcattaaatgggatgaaaaccaatgtcaccatt
gagatagattcagagcaaaaaaaattatattgttgtgtttctcagacatttttacataat
aacttaaagaataacaagttagatatggtattggctgaaaaaatacagagagaattggga
attgtaatggaggtgtcattcatttgcaactgttcggaatacgcaattgaacattatcaa
aagcaacaagaagattatttggaacaatttattcaaacgatggaaacaaagattgcggaa
gcaccgaaagaacaaaaaacaatggaagctgtttgtatgtacgggaaaaatttttcagga
gaagcggttccgctcaaaacgattcgccaggcggtggagaagataattttggaaggaaag
gtatttgcatttgataaaagacagatgaaaaatcaaaaatacttgtacctctttaatatt
accgatcaaacagattccattagttgcaaattatttttaaaagaagataacttacaatta
tctgacggagattttgtaaaaatattagggaatgtgacttatgatacctatgcacaggaa
ttggttgtgatggtttcttccatgatgccgagcaaagaagaaaagcggttcgataactgt
gagaggaagagagtagagttacatgcacacacatcaatgtcatctatggaagggttgttg
agtgcaaaagaattgttgggagcggcaaaggaatttggtcataaagcaatagcgattact
gatgatgcggtggttcaagcatttccggatgcaatgggaagtgcaaaaaaaacaggaatt
aaagtactttatggagtagagggtcatcttgttgatgatatgtccaatatcttaaaggag
tttaatgacaaagatttgaatcaggagtttgtggtattcgatattgaaacaacaggtttt
tccagcattaatgatgcgattatcgaaatcggtgctgttaaaataaaaaatagagaaatt
atagacaggttcagtgaatttgtaaatccgaaaagagaaattccttatcatattacagaa
ttgacttctattacaaatgaaatggtgtgcaatgaagatacaatagaggaagttttaccg
aggtttatggaatttagcaaagacagtgtctttgtagcacataacagtgattttgatact
tcatttattaaagaaaattgcaaaagactggatttgctttatgatagaattgcgatagac
acggtggaattgtctcgagctttgttgacagatttgaaaagacacaagttgaatgtggta
gctaagaaattgggaatctccttagaaaatcaccatagagcggtagatgacgcggaagca
acagcacaaatctttttgaaatttttgacaatgatagaggagtgcggtgttacgacatta
gcagaagtaaatcaaaaaattacaaagacaaatattgataccattcgagataaatcaatt
accatttttgctcagaatttagttgggttaaagaacttatacaaactgatttccttttca
cacatcaagcatttttatcgtatcccacgcattttaaagagtgaattggttgagcataga
gaaggattgttaattggtacaggcggagagaacggagaaatctttggaggagtaagagaa
gaagttgaacgaggcgttgatccttccgtagtggacgaaaaaataaaattttatgatttt
gcggaagttatgcctgttagcacctatcgtagttttttcagtgcaagatttgatatgaat
gagactgatttgagaagaatcaatcagagaatttatgatgctgcaactcaagcgggaatt
atgacagttgctgttggaaatgtacattatttgaatccggaagatggaatttatcgtcat
attttgcgttacggacaaaagaaaaaagatgatagaatagatcaagctctttattatcgg
acaacacaagaaatgttggatgagtttgagtatctggggaaagaggttgcttacgagatt
gttgtgaaaaataccaatgatttcgctgatttgattgaagagatgttacctgttcccgag
gggacatttccgcctgagatagaaggtgcaaaagaagatcttagagagatgtgttacgag
aaggcaaaacggatttatgggaatcctctacctgaaatagttgaaaagagactggataga
gagttgagttctatcattgggaacggatatgctgtaatgtatatcattgctcaaaaatta
gtgacgaaatctttgagagacggatatttggtaggttcaagaggatcagtcggttcttct
tttgctgcaacaatgagtgatattacagaggtgaacccgttgcctccacactacatttgt
gaaaatgaagattgcaagtactcggaatttatggagagtggagcatttggttcaggagta
gatatgccgaataaactgtgtccttgttgtggcagagaattgaaaaaagacggctttgat
attccttttgaagtatttttgggatttgaaggagataaagaacctgatattgatttgaac
tttgccggagaatatcaaccgaacgcacataagtttgtagaagatttattcggagaaggc
tatgtgtttcgtgccggaacaattggaacagttgcggaaaaaacagcatatggatatgtt
gtcaagtatttggaagagaataatttggttgcaaataatgctgaaaagcagcggttacag
ttaggatgcacaggaattaaaagaacttccggacagcatccgggcggtgtcatggtttgt
cctaagaacaaagatatctatgattttacaccggtacaatatcctgcaaatgatacaaaa
tgcggagtgattacaacacattttgattatcattctatcagtggccgtattttgaaattg
gatattctcggacacgatgttccttccatcattagacacttagaagatatgacaaacgtt
gtagcaacagaaattccgttggatgatgaaagagttatgtcgatatttacttctactgat
gcaattgattgcgatttatctcagatacaatgtgagacggggacattaggaattccggag
tttggaacaagatttgtacaacacatgttgatggacacgaatcctcatacatttgcggaa
ttaatacgtatttccggtttatcccatggaacggatgtatgggttaataatgctcaagat
ttggtaagaagtaacaccgttaccttaaaagatgttatttctacaagggacgatattatg
aattatctgattcaagaaggtttgccttctaaaatgtcttttaagattatggagaatgtt
cgtaaaggaaaaggacttacagaagaacaggaagaatgtatgataagtcatcaagtcccg
aattggtatattacttcttgtaaaaaaattaagtatatgtttccaaaggcacatgcggtg
gcttatgtgatgatgtcatttagaattgcatactttaaggtgtatcacaaagaagcattt
tatgcggcttgtttcagcacaaaggtggataactttgatgtggatttgatttgtagagga
aaagaagcggttatgatggcataccaagaattaaaacaaaaagaaaataatttaacagca
aaagagatgggatttattaccgttttggaattagcatatgagatgcatcaaagaggtgtg
aagatgaatcatgtagatatctataagtcggattccaaaaaattttatgtgcttgacaat
gaaatcttaccaccgttgctcagtattccgggcttgggactcacggttgcggaaaaaatc
aaagaagaggccggcaagtcagaatttatttctttagaagattttaggatacgaaccaag
gcgagtaaaacggtaattgaaactttgaggaatcatggttgtttacagggattgcctgaa
acgaaccaactttctcttttttaa
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