Filifactor alocis: HMPREF0389_00381
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Entry
HMPREF0389_00381 CDS
T01663
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
faa
Filifactor alocis
Pathway
faa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
faa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0389_00381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
faa03019
]
HMPREF0389_00381
03009 Ribosome biogenesis [BR:
faa03009
]
HMPREF0389_00381
Enzymes [BR:
faa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMPREF0389_00381
Messenger RNA biogenesis [BR:
faa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0389_00381
Ribosome biogenesis [BR:
faa03009
]
Prokaryotic type
rRNA helicases
HMPREF0389_00381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_C_2
AAA_22
GDPD_2
DUF3918
Motif
Other DBs
NCBI-ProteinID:
EFE28466
UniProt:
D6GS25
LinkDB
All DBs
Position
complement(295875..297020)
Genome browser
AA seq
381 aa
AA seq
DB search
MKFKEFNLRKEHILALQDMYIENPTDIQSKVIPKMRKGNDILAHAQTGTGKTLAFLIPIL
ESIPDISSGIKSLIIVPTRELSNQITDVLKYFQKYRSLSVVNASGGHNITTQIQKLSSNT
DIVVGTPGRVLDLLRNGNINFKNIDSFVIDEMDQILAFGFLEDVILLMNKTPRKKQVCMF
SATVSQDVKKLSKQFMLNPIYLTAERGEVVLDNISQLIVQTKDSRKLSSLMYSIEKINPF
MCMIFCNSKKNAEKLYSDFIHHQYKNMELLHGEMSQNKRENILKKFRELKVQYLITTDLS
ARGMNIEGVSHVINYDIPRDVEYYIHRIGRTGRMNQIGYAISFVTEKDIANMKKIQKRIK
KTIPVVYDTNDKEREKMEYSF
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaaagaatttaatttaagaaaagaacatattcttgcattacaagatatgtat
attgagaatcctacagacattcaaagtaaagtgattcctaaaatgagaaaaggaaacgac
attcttgcacatgctcagacaggaacaggaaagactcttgcatttttaattcctatttta
gagagtattccggatatttcatctggaataaagagtctaattattgttcctacaagagaa
ctatctaatcagattactgatgttttaaaatactttcaaaagtatagaagtttgtctgta
gtgaatgcatcaggaggacataatattactacacaaattcaaaaattatcttcaaataca
gatattgttgtagggactccaggtagagtattagatttgttaagaaatggaaatatcaat
tttaaaaatatagatagttttgtaattgatgaaatggatcagatattggcatttggattt
ttagaagatgtaattttgttgatgaataaaactccaagaaaaaaacaggtttgtatgttt
tcggctactgtttctcaagatgtaaaaaagttatcaaaacagtttatgttaaatcccatc
tatttgacagctgaacgaggagaagtggtattagataatattagtcaactaattgttcaa
acaaaagattccagaaaattaagttctttaatgtattctatagaaaaaatcaatccgttt
atgtgcatgattttttgtaattctaaaaaaaatgctgagaaattgtactctgattttatt
catcatcagtataagaatatggaattattacatggagaaatgtctcaaaataaacgtgag
aatattttgaaaaaatttagagagttaaaagtacaatatttgattactaccgatttatct
gcaagaggaatgaatattgaaggtgtcagtcacgttattaattatgatattccaagagat
gtggagtattatattcatagaattggcagaaccggacgaatgaatcagataggatacgca
atatcctttgtgacagaaaaggatattgcaaatatgaaaaaaattcaaaaacgaattaaa
aagacaataccagttgtttatgataccaacgacaaagaacgtgaaaaaatggaatattct
ttttag
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