Filifactor alocis: HMPREF0389_00820
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Entry
HMPREF0389_00820 CDS
T01663
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
faa
Filifactor alocis
Pathway
faa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
faa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0389_00820 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
faa03021
]
HMPREF0389_00820 (rpoA)
03400 DNA repair and recombination proteins [BR:
faa03400
]
HMPREF0389_00820 (rpoA)
Enzymes [BR:
faa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0389_00820 (rpoA)
Transcription machinery [BR:
faa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0389_00820 (rpoA)
DNA repair and recombination proteins [BR:
faa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0389_00820 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF2325
Motif
Other DBs
NCBI-ProteinID:
EFE28898
UniProt:
D6GQ45
LinkDB
All DBs
Position
complement(1460787..1461734)
Genome browser
AA seq
315 aa
AA seq
DB search
MIEIEKPNVTVLEYRNDYGKFALEPLERGFGITVGNSLRRVLLSSLPGVAVNSIKIEGVL
HEFSTIPGVKEDVTEIMLTLKELAMVMNSEESRQRTLIIEQEGEGIITAGDIICPPDVEV
LNPDLHIMTCSKDTKLYMEINVSKGRGYVSSEDNKTEDMPIGVIPMDSIYTPVKKVNYTI
EPTRVGARSNLEKLTFEIWTNGSFEVQEAVSLGSKILIEHLNLFLNLSDKLSEIELMVEK
EEGKKEKALEMTIEELDLSVRSYNCLKRASINTVEELTKKTEDDMMKVRNLGKKSLEEVV
GKLHDLGFTLKPEEE
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaatagaaaaaccaaacgtaacagtcttagaatatagaaatgattatggtaaa
tttgcacttgaacctttagaaagaggattcggaattactgtagggaattcattgagaaga
gtgttattgtcatcacttcccggagttgctgtaaattctatcaaaatcgaaggtgtgttg
catgaattttcaaccatcccgggagtaaaagaagatgttacggaaattatgcttactcta
aaagaattagcaatggttatgaatagtgaagaaagcagacaaagaacattgataatcgag
caagaaggagaaggaattatcacagcaggtgatattatttgccctcctgatgttgaagtt
ttgaatccggatcttcacattatgacttgttcaaaagacacaaaattgtatatggaaatt
aatgtaagtaaaggcagagggtatgtttcttctgaggacaataagacagaagatatgccg
attggagtgattccgatggattctatctatactcctgtgaaaaaagtaaactataccata
gaacctacaagagtcggtgcaagatccaatttagaaaaacttacatttgaaatatggaca
aacggaagctttgaggtacaagaagcggtttctttgggttccaaaattttaatcgaacac
cttaatttattcttgaatttaagtgataaactaagtgaaattgaattgatggttgaaaaa
gaagaaggcaagaaagaaaaagccttggaaatgaccattgaagaattagatttgtccgta
cgatcttacaattgtctgaaacgagcatcaatcaataccgtagaggagctgaccaaaaaa
acggaagatgatatgatgaaggtaagaaaccttggtaaaaaatcattggaagaagtagtc
ggaaagctgcatgaccttggcttcaccttgaaaccggaagaagaataa
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