Filifactor alocis: HMPREF0389_01531
Help
Entry
HMPREF0389_01531 CDS
T01663
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
faa
Filifactor alocis
Pathway
faa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
faa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0389_01531 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
faa03021
]
HMPREF0389_01531 (rho)
03019 Messenger RNA biogenesis [BR:
faa03019
]
HMPREF0389_01531 (rho)
Transcription machinery [BR:
faa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HMPREF0389_01531 (rho)
Messenger RNA biogenesis [BR:
faa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HMPREF0389_01531 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
ATPase_2
NACHT
AAA_22
SAP
Spore_III_AA
HeH
S1CSD-TOTE-2
AAA_25
AAA
AAA_24
OB_RNB
Rho_N
Se_S_carrier
AAA_19
Rrn7_cyclin_N
Motif
Other DBs
NCBI-ProteinID:
EFE27613
UniProt:
D6GTU2
LinkDB
All DBs
Position
complement(892269..893684)
Genome browser
AA seq
471 aa
AA seq
DB search
MKERLKKLKVAELKELASDCGISIKEKHKKDEFVAMLLEESYDEIVREYFDKRDNSLLSK
EEQENPSSNQKESSQQEQEMNSTRHNLYDKKEYERIIQDKDSATAEGILEILPDGFGFLR
GPNYISTENDVYVSPAQIRRFNMKTGDKLLGIVRPKNKNERFDALLYVKSVNGIKPDIAS
KRKDFEKLVPIYPDTRLKLAHCDVSPSVRLVDIFTPIGKGQRGLIVAPPKAGKTTLLKQI
ANAILKNHSEVELIVLLIDERPEEVTDIRESVQADVISSTFDELPSNHIKVAEMVLARAK
NLVEHGRDVVILMDSITRLARAYNLTIVPTGRTLSGGLDPGALYGPKKFFGAARNVRAGG
SLTILATALIDTGSRMDDMIYEEFKGTGNMELHLDRKLAEKRLFPAMDIDRSGTRKEELL
LDVKEYEKILKLRRILSNKSSQEAIETVLRANYITKDTDELLDKVLSYYEK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagagattgaaaaagctgaaagttgcagagctgaaagaacttgcatcagactgt
ggtatttccataaaagaaaagcacaaaaaagatgagttcgttgctatgttgctcgaggag
tcgtatgacgaaatagtaagagagtattttgataagagagacaacagccttttgtcgaaa
gaggagcaggaaaacccatcttcaaatcagaaagaatcctctcagcaagagcaagagatg
aacagtacccgtcataacttgtatgacaaaaaagaatatgagagaatcattcaggacaaa
gattcggcaacggcagaaggaattttggaaattcttccggacggatttggatttttacga
ggaccgaactatatttcgaccgaaaatgatgtttatgtcagtccggcacaaattcgacga
tttaatatgaaaacgggagacaaactccttggaattgttcgaccgaaaaacaagaatgag
cgttttgatgcacttttgtatgtcaaatccgtcaacggaatcaaaccggatatcgcttca
aagagaaaagattttgagaaattggttccgatttatccggatacacgattgaaattggca
cattgtgatgtatcaccctccgttcgtttggtggatattttcacaccgatcggaaaaggg
cagcgcggtctgattgttgcgccgccaaaagcaggtaagacaactttactcaagcagatt
gccaatgcaattttgaagaatcattccgaagtagagttgattgtgcttttgattgatgaa
cgaccggaagaagtgacggatattcgtgaatcggtacaggcagatgtgatttcatccact
tttgatgagttgccgtccaaccatatcaaagtagcagagatggtgttggcaagggccaaa
aatttggtagaacacggaagagatgtcgtgattttgatggacagtatcacacgattggca
agagcatacaacctgaccatcgttccgacagggagaacattatcaggcggattggatccc
ggcgcactctatggacccaagaaatttttcggagcggcaagaaatgtgcgtgcaggaggt
tctctgaccattttggcaactgcattgattgatacaggctcgaggatggacgatatgatc
tatgaagaattcaagggaaccggtaacatggaacttcatttagaccgcaaattggcagaa
aaaagattgttcccggctatggatatcgaccgttccggcacaagaaaagaagagctgtta
ctggatgtaaaagaatatgagaaaatcttaaaattacgaagaattctatccaacaaatca
tctcaagaagcaattgaaaccgttcttcgagcaaactatatcacaaaggataccgatgaa
ctgttggacaaagtcctttcctactatgaaaaataa
DBGET
integrated database retrieval system
