Ficedula albicollis (collared flycatcher): 101805642
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Entry
101805642 CDS
T02815
Symbol
SOX5
Name
(RefSeq) SRY-box 5
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fab03000
]
101805642 (SOX5)
Transcription factors [BR:
fab03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
101805642 (SOX5)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Cob_adeno_trans
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
101805642
NCBI-ProteinID:
XP_016161570
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All DBs
Position
1A:complement(62002421..62296396)
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AA seq
810 aa
AA seq
DB search
MCAPAVLACGYLFPCIQQGCLMEFGAEETLGLLPGRFAELCGKQSLRPTEMSSKRPASPY
GEADGEVAMVTSRQKVGEEESDGLPAFHLPLHVSFPNKPQSEEFQPVSLLTQESCGHRTP
TSQHNTMEVDGNKVMSSFALHNSSTSPLKAEEGGRQSGESLSSTALGTPERRKGSLADVV
DTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLM
GMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKIN
LLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTT
MAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKIPGISQGNLGAAMSPTSIHTDKSTNS
PPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPALRINSGASSLKSSVPATLASPSA
RANTIDILSSITSSGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCR
TEKDKTTLETLTQQLAVKQSEDGKFSHAMIDFNMSGDSDGSAGVSESRIYRESRGRGSNE
PHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLS
KQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATA
GVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKSEEPHIKEEMQPDDVNG
EIYDEYDEEEDDPDADYGSDSENHIAGQAN
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcgcccgctgttttggcatgtggctaccttttcccttgcatacaacagggctgt
ttgatggagtttggagctgaggaaactttgggtttgttgccaggacggttcgcagaactt
tgtggaaagcaaagcttgagaccgacagagatgtcttccaagcgaccagcctctccgtat
ggggaagcagatggagaggtagccatggtgacaagcagacagaaagtgggagaagaggag
agtgacgggctcccagcctttcaccttcccttgcatgtgagttttcccaacaagcctcag
tctgaggaatttcagccagtttctctgctgacgcaagagagctgtggccataggactccc
acttctcagcacaacacaatggaagttgatggcaataaagtgatgtcttcatttgccctg
cacaactcatctacctcacccttgaaggcagaagaaggtgggcgtcagagtggagagtcc
ttgtccagcacagccctgggaaccccagaaaggcgcaaggggagccttgcagatgtcgtg
gacaccctgaagcaaaggaaaatggaagagctgatcaaaaatgagccagaagaaactccc
agtattgaaaagctactatcaaaggactggaaagacaagcttcttgccatgggatcagga
aactttggagaaataaaagggactccagaaagcctcgctgagaaagaaaggcagctcatg
ggtatgatcaatcagctgaccagtttgagggaacagctgctagcagctcacgatgaacag
aagaagctggctgcatctcagatcgagaaacagcgccagcaaatggagctggctaagcag
caacaagaacagattgcaagacaacagcagcagcttctgcagcagcaacacaaaattaac
cttcttcagcaacagatccagcaggtccagggtcagctgcctccattaatgattcccgta
ttccctccagaccaacgaaccctagcagcagctgcacagcaaggattccttcttcctcct
ggtttcagctacaaggcaggatgcagtgacccctaccccgttcagctgatcccaactacc
atggcagctgctgccgcagcaacaccaggcttaggtccactccagctgcagcagttgtat
gctgcccaacttgctgcgatgcaagtgtctccgggaggcaagattcctggcatttcccag
gggaaccttggtgctgctatgtcccctaccagcatccacacagacaagagcacaaacagc
cctccacccaaaagcaaggatgaagtggcccagcctctgaacctttcagccaaacccaag
acatctgatggcaaatctcctacatcacccacctctcctcacatgccagctctgagaata
aacagtggggccagttcactaaagtcctctgtgccagcaacattagcaagtccttcggcc
agagccaacacaatagacatcctttcttctatcacgtcgtcaggttatttaaatgaccat
gatgctgttacgaaggcgattcaggaggcccgacagatgaaggagcagctacggagggag
cagcaggtgctggatgggaaggtggccgtggtgaacagcctgggtctcaataactgcagg
acagaaaaagacaaaacaacactggagaccctgactcagcagctggcagtaaaacagagt
gaagatgggaagttcagccatgcaatgatagatttcaacatgagtggagattctgatgga
agcgcaggagtttcagagtctcggatttaccgggaatcccgaggacgtggtagcaatgag
ccccacatcaagcgcccaatgaatgcattcatggtgtgggctaaggatgaacggaggaag
atccttcaagccttccctgacatgcacaactcaaacatcagcaagatactaggatctcgc
tggaaagctatgacaaacctagagaagcagccatactatgaggagcaggctcggctcagc
aaacagcacctggagaaatacccagactacaaatacaagcccaggccgaagcgtacctgc
cttgtagatggcaaaaagctacgcattggcgagtacaaggccatcatgcgcaacagacgc
caggagatgaggcagtactttaatgttgggcaacaagcacagatccccattgccacagct
ggtgtagtgtacccaggagccattgccatggcaggaatgccttccccacacctgccctcg
gagcactcaagcgtgtccagcagcccagagcctggcatgcccgtcatccagagcacttac
ggggtcaagagtgaggagccacacatcaaggaggagatgcagcctgacgacgtcaacgga
gagatctacgatgagtacgatgaggaggaggacgaccccgatgcagattatggcagtgac
agtgaaaaccacattgcagggcaagccaactga
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