Ficedula albicollis (collared flycatcher): 101805932
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Entry
101805932 CDS
T02815
Symbol
PRPF38B
Name
(RefSeq) pre-mRNA processing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101805932 (PRPF38B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fab03041
]
101805932 (PRPF38B)
Spliceosome [BR:
fab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101805932 (PRPF38B)
Complex C
U4/U6.U5 tri-SnRNP related factors
101805932 (PRPF38B)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
101805932
NCBI-ProteinID:
XP_005050603
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Position
8:24111890..24125123
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AA seq
626 aa
AA seq
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MDSPRCGGMFAKAPPTVRGPPVDYIQERAVELESSSREQLEFSGCLRGSQKLLSQFCREA
VDAPPLQARVGWGSKPPALMEGVRVRGRGLELDRSSLRFPSNSIPPVQQPLQSGGPKPAA
SGKQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPW
EKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRA
LGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFP
RIPVPVQKAIDQQIKSRPRKIKKDGKEGMEEIDRHAERRRSRSPRPRSISPRRSPRRSRS
RSHHREGHGSSSFDRELERERERQRLEREAKEREKERRRSRSTDRSLERRRSRSRDRYRS
RSRSRDRKGDRRDRDREREKENERSRKKERDHDKERGSEREKDRSRERSKERKSKGDTEE
RRHKDDKDEKKHRDDKRDSKKERKHSRSRSRERKHRSRSRSRNTGKRSRSRSKEKSSKHK
NENKEKSNKRSRSRSRGRTDSVEKSRKRDQSPSKEKSRKRSRSKERSHKHDHSDSKDHSD
KHDRRRSQSTEQESQEKQQKNKDETV
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggacagccctcggtgcgggggaatgttcgccaaggcacctccgaccgtccggggccca
cctgttgactacatacaggaaagagctgttgagctggaatcgagcagcagggagcagtta
gagttttctgggtgtctgaggggttctcagaagctgctcagccagttctgcagggaagct
gtggacgccccaccccttcaagcccgggtcggatggggctctaagccgcctgctctaatg
gaaggcgtccgtgtccgtggcagggggttggaactagacagatcgtctttaagattccct
tccaactcaatcccgcccgtgcagcagccgctgcagagcgggggccccaagccggcggcc
tcgggcaagcagggcaacgtgctgccgttatggggcaacgaaaagaccatgaacctgaac
cccatgatcctcaccaacatcctctcgtcgccctacttcaaggtgcagctctacgagctc
aagacctaccacgaagtggtggacgagatctatttcaaggttacgcatgttgaaccatgg
gaaaaaggcagcagaaaaacagcaggccagacagggatgtgtggaggggtgcgtggtgtt
ggaactggaggaattgtctctactgctttttgtctgctctacaaattatttacactgaag
ctcactcgtaagcaagtgatgggccttatcactcatacagactccccatatattagggct
cttggatttatgtatattaggtacacacagccacctacagatctatgggactggtttgaa
tcctttcttgatgatgaggaggatctggatgtgaaggcaggtgggggttgcgttatgacc
ataggggagatgcttcgttccttcctcactaagcttgaatggttttccacgttgtttcca
agaattcctgtgccagtccagaaagctattgaccagcaaattaaaagcagacctagaaaa
atcaagaaagatggcaaggaggggatggaagaaatagaccggcatgcagagcgtagacgt
tcaaggtctccaagaccaagatccatcagtcccagaaggtctcccagaagatccagaagc
agaagtcaccatcgggaaggccatggatcatctagttttgatagagaactagaaagagaa
agagaacggcagagattagaacgcgaagcaaaggagagagaaaaagaaaggcggagatct
cgaagcaccgatcgctcactagagcggagacgaagcagaagcagggacagatacagaagc
cggagtcgaagtcgtgacaggaaaggagatagaagagacagggacagggagagagagaaa
gaaaatgaacggagtcggaaaaaagagagagatcatgataaggaaagaggtagtgagagg
gaaaaagatcgatctagagaaaggtcaaaagaaaggaaaagtaagggtgacacagaggag
agaagacataaggatgacaaagatgagaaaaaacatcgcgatgacaagagggattccaaa
aaagagagaaagcatagtagaagtcgaagccgggaaagaaagcacaggagtaggagccga
agcaggaacacaggtaagcgcagcagaagcaggagcaaagaaaaatcaagtaaacataaa
aatgaaaataaggagaagtcaaataaacgaagtagaagtagaagcagaggaagaacagat
agtgttgagaagtccaggaaacgtgatcagagtcccagcaaagaaaaatctaggaagcgt
agcagaagcaaagaacgttcccacaaacatgatcacagtgatagcaaggaccattctgac
aaacatgatcgtcgaaggagccaaagtacagaacaagagagccaagaaaagcaacagaaa
aacaaagatgagactgtgtga
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