Ficedula albicollis (collared flycatcher): 101805987
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Entry
101805987 CDS
T02815
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA decapping 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101805987 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101805987 (EDC4)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101805987 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
101805987 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
WDR55
RnlA-toxin_DBD
Motif
Other DBs
NCBI-GeneID:
101805987
NCBI-ProteinID:
XP_005052664
LinkDB
All DBs
Position
11:7353124..7381185
Genome browser
AA seq
1407 aa
AA seq
DB search
MFFGISVICWSGCCKKKLFHSDVWSWLCFSSGSVNENQRPSNSYNGDLNGLLVPDPLGSG
DGPALAKPVHRSISLGALQEKQVICLSGDDSSTCLVISAKDVEIVASSDSSITSKARGSN
KVKIQPVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFT
GGVADLAFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVNIKRPDSTPLNTFRRII
WCPFIPDENEENGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGH
STCLSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDN
HKKQDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMSILPSLKVCLDL
SAEYLILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTE
VLPAEEENDTLSVEGTQGSGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMP
SHSSHEEFAFPDHMADMSTEGLGPEKESVHGSQPDLRRIAELPVPADFLSLSNDAKPKLM
TPDAFMTPSTSLQQIAVSPGSSVSSLTAVTAMSSTSVTDASLPRASEDLTVSPKMQLDTS
LTLSSSSSSLQTSPRSHSVLIPGLSDKLTPKAPVPVAPGNSSLALELQEVEPLVVPQASP
TRERSPDVISSASTAMSQDIPEIASETLQRSFAAAPAALPAEALEPGHHADSMASAASAL
HLLSPRNRHSSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDIT
RETRNSMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGF
GAKASAQRLPVKDWKVKASPRASPKLKRKGKKDDGDMNQSPRSSNNQVTAEFQDELMCIL
RSQQRELSELRQNQMELLQRLTDHLDAIQSSLMGHMERVMDSQQEQEQRRLDRVLLEGQQ
RNGQLQEHLSQQLSQSLSTAVCNRLERTIREEMKKTVPQCISKSMDPTVSQLSNTVAAKL
TAVEGTLKENITKLVKSKNLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMF
QQINDTFKQGTQEYIQQLEAHLKNKKVREQEVREPLLNQLRQLISTFQSSTEQLASTIAA
SVHAEVQHQLHIIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPI
PSTHMDFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLS
QPVLLSLIQQLSSDLGTRTELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFLQ
VELHNPLSKPARRLMIMLQGLVTPGMT
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgttctttggaatttctgtgatctgctggagtggttgctgtaagaaaaagctgtttcac
tcggatgtgtggagctggttgtgtttttcctcaggttcggtgaatgagaaccagagacca
tcaaattcctataacggggacctgaatgggctgctggtgcctgatccccttgggagtgga
gatggacctgctttggccaagccagtgcatcgcagcatctctctaggagccctccaggaa
aaacaagtcatctgcctttctggtgatgacagctccacatgcttagttatatcagcaaaa
gatgtggagatagtggccagcagtgattccagcatcaccagtaaggccagagggagtaac
aaggtgaaaatacagcccgttgctagatatgactgggagcagaaatactattatggcaat
ctgatagctgtttcaaactcttacctggcttatgccattagagctgccagcaatggctct
gctatggtgcgggtgttgagtgtcagcactgctgagcggaccttgctgaagggattcaca
ggaggtgtggcagacctggcctttgctcacctcaactccaaccagctggcctgcctggac
gaggctggcaacctttttgtctggcgcctggccatggataaagaaaaaatccaagaggag
atcttggttaacatcaagcggcctgacagcaccccactgaacaccttccgaagaatcatc
tggtgccctttcatcccggacgagaacgaggagaacggggaagagggcagccagacgttg
gcactgctgcatgaggacagggcagaggtgtgggatttggatatcatccgaaccaacaac
agctcctggccggtggaagtgcctgatatcaaagaaggtttcattgtggtgaaaggccac
agcacgtgcctgagtgagggagcactttctccagatggaactgtgttggccacagcaagc
catgatggttttgtaaaattctggcagatctatattgagggacaagatgaaccaaggtgt
cttcatgaatggaaaccccatgatggtagacctctttcctgcctgctcttttgtgacaac
cataaaaagcaagacccagaagttcccttctggaggtttctcatcacaggagccgatcag
aacagagaactgaagatgtggtgcacggtgtcttggacctgtttgcagactgttcgcttt
tctcctgacatcttcagctccatgagtattcttcccagcctgaaagtctgcctggacctc
tcagctgaatatctgatactgagtgatgtgcagagaaaggtcttgtatgtgatggagttg
atgcagaaccaagaggagggcaaggcttacttcagctccatctcagagttcctccttacc
cacccagtgctgagctttggcatccaggccgtgagccgctgccgcctgaggcacaccgag
gtgctcccagcagaggaggaaaatgacaccttgagtgtagaaggtactcagggctctggg
gctgttgaatcagcagcaggtgtgctgataaaactcttctgtgttcacaccaaggcccta
caggatgtgcagattagattccagcctcttcatagccctgacacaagtgcttccatgcct
tcccatagctctcatgaggagtttgcctttccagaccacatggcagatatgagcacggag
gggctggggcctgagaaggagtccgtgcacggctcgcagccagacctgcggcgcatcgct
gagctgcctgtgccagcagacttcctctccctctccaatgatgccaagcccaagctgatg
actccagatgcattcatgacaccaagtacttctcttcaacagatcgctgtctctccaggc
agcagtgtcagttccctgactgcagtcacagccatgagcagcacttctgtcacagatgcc
tctctgcccagagcatcagaagacttgactgtgagccccaagatgcagctggacaccagc
ctcacgctgagcagcagcagcagcagtctccagaccagtcctaggagtcactctgttctt
atcccaggcctctctgacaagctaacaccaaaggcacctgttccagtcgcaccaggaaac
tcctctctagcactggaactgcaggaagtggagcccttggtggtgccccaggcttctccc
acccgtgagcgctccccagacgtgatctcctcagcttccacagccatgtcccaggatatc
ccggagatcgcctccgagacgctgcagcgcagctttgcggcggccccggccgcgctgccc
gcggaggcgctggagcccgggcaccacgcagacagcatggcctcagctgcctctgccctg
cacctgctctcccccaggaaccgccacagctccgagcacagccaccactctttggacatg
cctccagtggaggtggacagactgaatgctccatctttactggagactgctttaactcag
gaaaatgcgtcttctgacagtgttgtgagtcagccgtggccagcggctcctgacataacc
cgggagaccaggaacagcatggcagacagcccaagggatgaggttgaagaaaagcacaag
agctcttcctaccatcgacacagctaccaccttctgcagcatgacagccaggatgccagt
gcagaacaaagtgaccatgatgatgaagttgcaagcttggcttctacgtcaggtggattt
ggtgccaaagcatctgcgcagaggctgcctgtgaaggattggaaagtcaaggcttccccc
cgggcttccccaaagctaaagaggaagggcaagaaagatgatggggatatgaaccagtca
ccaagatcatctaacaaccaggtgacagcagagttccaggatgagctgatgtgcatcctg
aggagccagcagcgggagctctccgagctgcggcagaaccagatggagctgctgcagcga
ctcacggatcacctggatgccatccagagctccctcatgggccacatggagagggtgatg
gactcccagcaggagcaggagcagaggaggctggaccgggtgctgctggaagggcagcag
cgcaatgggcagctgcaggagcacctgtcccagcagctgtcccagtccctgtccacagct
gtgtgcaaccgactggagaggaccatccgggaggagatgaagaagacagtgccccagtgc
atttcaaaaagcatggaccctactgtcagccagctcagtaatactgttgctgccaagctc
actgctgttgaagggacacttaaagagaacattaccaagctagtgaaatcaaagaacctt
acagacagtgttgtgagggccacagctgacactctgcagggacccatccagtcagcctac
agggaggccttccagagcgtcgtgctgccagcctttgagaagagctgccagtccatgttc
cagcaaatcaatgacaccttcaagcagggcacacaggaatatatccagcagctggaggct
cacttgaagaacaagaaggtacgagagcaggaggtgcgggagccgctgctgaaccagctg
cggcagctcatcagcaccttccagagcagcacggagcagctggcgtccaccatcgcagcc
agtgtccatgctgaggtgcagcaccagctgcacatcatcgtgggcaacatgcaggagtct
attttggcccaggtgcagagagtcattaaaggagaagtgagcctggctatgaaggagcag
caagcagctgtcacctcgagcatcgtccaggcaatgcgctcggcagccgggacacccatc
ccctctacgcacatggatttccagtcccagcagactcacatccttcagctgctccagcag
ggacacctcaaccaagctttccagcaggctctaacagcagctgatctcaatctggttctg
tatgtctgtgagactgtggatactcagcaagtatttggacagcatccatgccctctgtcc
cagcctgtgctgctctccctcattcagcagctctcctcagatctgggcactcgtacagag
ctgaagttgaactacttggaggatgcagtgatgcacctggaccaaagcgaccccatcacc
cgagaccacatggggtcagtcatgaaccaggtgcggcaaaagctcttccagttcctccag
gtggaactgcacaaccctctgagcaaaccagcacggcgcctcatgatcatgctgcagggc
ctggtcacccctggcatgacctag
DBGET
integrated database retrieval system
