Ficedula albicollis (collared flycatcher): 101806365
Help
Entry
101806365 CDS
T02815
Symbol
TRIP12
Name
(RefSeq) thyroid hormone receptor interactor 12
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101806365 (TRIP12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fab04121
]
101806365 (TRIP12)
Enzymes [BR:
fab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
101806365 (TRIP12)
Ubiquitin system [BR:
fab04121
]
Ubiquitin ligases (E3)
HECT type E3
101806365 (TRIP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
UNC45-central
HEAT_2
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
101806365
NCBI-ProteinID:
XP_016155991
UniProt:
U3JWW4
LinkDB
All DBs
Position
9:complement(10995305..11048960)
Genome browser
AA seq
2067 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDAVGGRSHLGQAKHKAHSPPENRKSISKTPKVQ
SNTTSEQSKGHFSKRGCSSSAVLIPQQEDPERVDTSEKQKTGQVPKKDNSRGVKRSASPD
YRRTNSPSSAKKPKALQHTETSSETSKPHTKSKRRHSDEEQPKSTQLPSTSKAHTRKGGA
AGSSRSQKRKRTENLSCIKSGSSVESTGTEEKSAKVSKLASKSVTSAKAGCSTITDSSSS
ASTSSSSSAVASASSTVPQGARVKQGKDQSKARRSRSASSPSPRRSSRDKEPSKTGGSSK
FDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELPS
LRRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADPDNNQDGVNSSAARTDDPPQG
AAASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGS
GASSKAQQLLQGLQATDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEH
NFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRH
SKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTH
QDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNIQQLLVVTPPILSSGMFIMVVR
MFSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGGCQEQIDLVPRSPQELYELTSLICE
LMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEAAHQVGEDE
ISLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNTSGHSELKKDDARAQLMKE
DPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAVSSH
IASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKNLAESEALLTSPPKV
CTNGSGTLGTTTTISTGTATAASNAAADLGSPSLQHSREDSLDLSPQGRLSDVLKRKRLP
KRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGRLSTQSNSNNIEPAR
TAGVSGLARAASKDTISNNREKIKGWIKEQAHKFVEHYFSSENMDGSNPALNVLQRLCTA
TEQLNLQVDGGTECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSEKDAVSRDIRL
KRFLHVFFSSPLPGEEPLGRLEPLENAPLLALVHKMNNCLSQMEQFPVKVHDFPSGNGTG
SSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRG
YGRVREDDEDSDDDGSDEEIDESLVDFQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQ
YSLQAEEERESTDDESNPLGRAGIWTKTHTIWYKPVREDEDGNKDCVGGKRGRAQTAPTK
TSPRNSKKHDELWHDGVCPSVLNPLEIYLISTPPENITFEDPSLDVILLLRVLHAISRYW
YYLYDNAVCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFD
TRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNRDELLKQAESV
MQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANPKGSQE
GTKYIHNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKW
MLRQETSLTSHDLFSIDPVVAKSIYHLEDIVRQKKRLEQDKTQTKESLQYALEALTMNGC
SVEDLGLDFTLPGFPNIELKKGGKDTPVTIHNLEEYLRLVIFWALNEGVARQFDSFRDGF
ESVFPLSHLQYFYPEELEQLLCGSKTDTWDAKTLMECCRPDHGYTHDSRAVKYLFEILSS
FDSEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKL
PDYSTIEIMREKLLIAAREGQQSFHLS
NT seq
6204 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccagccacaagacgacgcagtaggaggaaggtcacatttagggcaggcaaaa
cataaggcacatagccctcctgagaatagaaaatctatttcaaagacacccaaagtgcag
tctaatactacttctgagcagtccaagggacacttttctaaaagaggctgtagttcatct
gctgttttaataccacaacaagaagatccagagagagttgatacttcagaaaagcaaaaa
acggggcaagtgcctaagaaagacaattctcgaggagttaaacgcagtgctagtccagat
tacaggaggaccaattctcctagctctgctaaaaaacccaaagcacttcaacacactgaa
acttcctcagaaactagcaagccacatactaaatctaagagaagacactcagacgaagag
cagcccaagtctacacaattgccatcaacaagcaaggctcacaccagaaagggtggagct
gctggtagctccagaagtcagaaaaggaaaaggacagagaatctgtcttgtataaagagt
gggtcatcagttgaatcaactggcactgaagaaaagtcagcaaaagtctccaagctggct
tcaaaatcggtgacctcagccaaagctgggtgtagcaccatcaccgattcttcttcttca
gcttccacctcctcctcctcttctgctgttgcctctgcttcttctactgttcctcagggt
gccagagtgaaacagggaaaggaccagagtaaggctagacgttcccgttctgcatccagc
cccagtccaagaaggagtagcagggacaaagaaccgagtaaaacaggtggctcttcaaag
tttgactgggctgctcgattcagcccaaaagtcagtctccctaaaacaaaactgtctcta
ccaggctcttccaagtcggagacatcaaaacctggaccttcaggactacaggctaagcta
gcaagtctcagaaaatctacaaagaagcgcagtgaatcaccacctgctgagctccccagt
ttacggcggagcacacggcaaaagaccacgggctcctgtgctagcaccagtcggcgaggc
tctggcctgggcaaaagaggagcagctgaagctcgccgacaggagaagatggctgatcct
gacaacaaccaggatggagttaactcttcagctgcacggacagatgaccctccccaggga
gctgcagcttctagttctgttgctggagctgtaggtatgacaacttctggagaaagtgag
tcagatgattctgagatgggaagactacaagctctattagaggctaggggtcttcctcct
cacctgtttggccctcttggtcctcggatgtcgcagctcttccacaggacaattggaagt
ggagctagttctaaagctcaacagcttttacaaggtctccaagccactgatgaaagtcag
caactacaggcagtgattgagatgtgccagctgttggttatgggaaatgaagaaacatta
ggaggatttccagtcaagagtgttgtaccagctttgataacgctgctgcagatggagcac
aactttgacattatgaatcatgcgtgtcgggccttaacatacatgatggaagcacttccc
agatcatctgctgtagtggtagatgcaattcctgtcttcttggaaaagctgcaagttatc
cagtgcattgatgtggcagagcaggcgcttacagccctggagatgttgtcacgcagacac
agtaaagccattctgcaggcaggtggtttggcagactgtttgctgtatctggaattcttc
agtataaatgcacaaaggaatgcactagctattgctgccaactgctgccagagtataaca
cctgatgagtttcactttgtggcagactctttgccactgctaacacaaaggttaacccat
caggacaaaaagtctgttgaaagcacttgtctgtgttttgcacggctagtggacaacttc
cagcatgaagagaacttgctgcagcaggttgcttccaaggatttgttaacaaatatccag
cagctcttggttgtgacacctcctatcctgagctcaggaatgttcatcatggtggtgcgc
atgttctccctgatgtgctccaactgccccacacttgcagtccagcttatgaagcaaaat
attgcagaaacgcttcacttcctcctttgtggagcctcaaatgggggttgtcaagaacaa
attgaccttgttccacgaagtcctcaagaactttatgaacttacttctcttatctgtgaa
ctgatgccttgcctgccaaaagagggaatctttgctgttgatactatgctaaagaaagga
aatgcacaaaatacagatggtgcaatatggcaatggcgagatgacaggggtctctggcat
ccctataacaggattgatagtcgaataatagaggcagctcatcaggttggtgaggatgag
ataagcctgtctacgcttgggcgtgtctatactattgattttaactctatgcagcaaata
aatgaggatactggaacagctcgtgccattcagcgaaaaccaaaccctttagccaataca
aacactagtggacattcagaattgaagaaggatgatgctcgagcacaattaatgaaagag
gacccagaactggcaaaatcctttatcaaaacactgtttggtgttctttatgaagtatat
agttcttcagctggacctgctgttagacacaagtgccttagagcaattcttaggataatt
tattttgctgatgctgaacttctgaaggatgtgctgaaaaaccatgctgtttcaagtcat
attgcctccatgctgtccagtcaagaccttaagatagtagttggagccctgcagatggca
gagattttaatgcaaaagttacctgacatttttagtgtttacttcagaagagaaggggtg
atgcaccaagtgaaaaacttggcagagtctgaggctttgctgacaagccccccaaaagta
tgcactaatggttcaggaacgctgggaaccactacgaccataagcactgggacagccact
gctgccagcaatgctgctgcagacctgggctctcccagcttacagcacagccgcgaggat
tccttggatctgagcccacagggacgactgagtgatgttctaaagagaaaaagactgcca
aaacgagggccaaggagaccaaaatactcccctccaagagatgatgacaaagtagacaat
caagcgaaaagccccacaactactcagtctcctaaatcttctttcttggcaagtttaaat
cctaaaacatggggaagattaagcacacagtccaacagtaataatattgaaccagcacga
acagcaggagtaagtggtcttgcaagggctgcttccaaggataccatttccaataacaga
gaaaaaattaagggctggattaaggagcaagcccataaatttgtagaacattactttagt
tctgaaaacatggatggaagcaatcctgcactaaatgtattacagagactttgcactgca
actgaacaactcaacctccaggtggatggtggaacagagtgccttgtagaaatccgtagc
attgtctcggaatctgatgtctcctcatttgaaatccagcatagtgggtttgttaaacaa
ctgctgctctatttgacatctaaaagtgaaaaagatgctgtaagcagggatatcagattg
aaaagatttcttcatgtatttttttcttctccacttcctggagaagagccccttggaaga
ttagagccattagaaaatgcacctttgttggcattagtccataaaatgaacaactgcctc
agtcagatggaacagtttcctgttaaagtgcatgacttccctagtggaaatggaacaggg
agcagtttttctcttaacagaggatcccaagctttaaaattcttcaatacacatcagcta
aaatgtcaactgcaaagacatccagactgtgctaatgtgaaacagtggaaaggtggacct
gtgaagattgatcctctggctttggtacaagccattgaaagataccttgtagttagaggc
tatggaagagttagagaagatgatgaagatagtgatgatgatgggtcagatgaagaaata
gatgaatctttggttgattttcaattcttaaattcagggaatgtgagacacagattgcag
ttttacattggagatcacttgctgccgtacaatatgactgtgtaccaagcagtcaggcag
tacagtttacaagctgaggaagagagggagtctacagatgatgaaagcaacccactggga
agagctgggatttggacaaaaactcacactatttggtacaaacctgtgcgagaggatgaa
gatggtaataaggactgtgttgggggtaaaagaggaagagcacaaactgctcccacaaaa
acctcccctagaaattctaaaaaacatgatgagttgtggcatgatggtgtatgcccttcg
gtgttaaatcctctggaaatttacctcatatctactccacctgaaaatataacatttgaa
gacccttcattagatgttattcttcttttgagagttttacatgctatcagtcgatactgg
tattacttgtatgataatgcagtctgcaaggagataattccaacctcggagtttatcaac
agtaaactgacagcaaaagcaaacaggcagcttcaggatcctttggtaattatgacagga
aacatcccgacttggctgacagaacttgggaaaacatgcccgtttttctttccgtttgat
actcgccaaatgctgttttatgtgacggcctttgatcgcgatcgagccatgcaaaggcta
ctggatactaatccagaaatcaatcagtcggattctcaggatagcagagtggcaccgcgg
ctggacaggaaaaaacgcactgtgaacagagatgagctgttgaaacaggcagaatctgtg
atgcaggatctaggcagttcaagagccatgttggaaatccagtatgagaatgaagttggc
acaggcctaggccctacactagagttctatgcacttgtatctcaggaactacagagagca
gacttaggcctttggaggggagaagaagtgactttagccaatccaaaaggaagccaggaa
ggtaccaagtacattcataaccttcagggcctttttgcacttccttttggtagaacagcc
aagccagctcacattgcaaaagttaaaatgaagttccgctttctgggaaaactaatggcc
aaggcaatcatggacttcagactggtggaccttcctcttggacttcctttttataagtgg
atgttgcgacaggaaacttccttgacatcacatgacttgttcagtattgatccagtagta
gccaaatcaatatatcaccttgaagatattgtaagacaaaagaaaagacttgaacaggat
aaaactcagaccaaagaaagtctacagtatgcattggaggctctgactatgaatggctgc
tcagtggaagatctagggctggacttcacacttcctggctttcccaatatagagctgaag
aaagggggaaaagatacaccggtcactatccacaatttagaggagtatctcagattggtt
atattctgggcactaaatgaaggtgttgccagacagtttgactccttcagagatggattt
gagtcggtgttccccctcagtcatcttcagtacttctatcctgaggagttggagcagctc
ttgtgtggcagcaagacagacacttgggatgcaaagactttaatggaatgttgcaggcct
gatcacggttatacacatgacagtcgagcggtgaagtatctctttgaaattctcagtagt
tttgatagtgagcagcaaagactgtttcttcagtttgtgacaggcagccccagactgcct
gtaggaggttttcgaagtttgaatcctcccttgacgattgtacggaagacatttgagtcc
acagagaatcccgatgatttcttaccctcagtaatgacttgtgtgaactatctcaaattg
ccggactattcaactattgagataatgcgtgaaaaactcttgatagctgcaagagaaggg
cagcagtcattccatctttcctga
DBGET
integrated database retrieval system
