Ficedula albicollis (collared flycatcher): 101806592
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Entry
101806592 CDS
T02815
Symbol
CHD9
Name
(RefSeq) chromodomain helicase DNA binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fab03036
]
101806592 (CHD9)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
101806592 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
101806592
NCBI-ProteinID:
XP_016160815
LinkDB
All DBs
Position
Un
Genome browser
AA seq
2889 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKMSEFDQLNQYDSLKLHSVNQSFNSSADNVLSPHSQFNCSPVHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRPQQ
SRNNTGQDALSQPKDFMEVNVSTSLRVSVNHPPSVSNPSTSQQPLSVQQFSQTASASIHF
CGNQEGNFDGQSPTITPCSVSNSQQFSSPYSYSNNHISPTGLLQPTTALSTSQQTHSISD
FTGSDAFTSQTGTKQETTEHMLNPNTPLNSSTFQMLHSAHPQGNFSSSKLSPVNINFPAS
TGSASQISHFTDPIESNGFTSLDDNLLHQVETHSEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEHHITPQQVTPPSEPVRAPSQSQIHPWHSAVSNQHLQGRSRAALQGQP
PSKKTDGSGSYTKMQNTQVRATSEKKQKKKTDSESKQEKANRIISEAIAKAKERGERNIP
RVMSPENFPSVSAEGKEEKKGRKVKSKPKDKECKKPKTGSSSKIKEKTKIGKLIITLGKK
QKRKNESSDELSDAKQTPQQPLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAAKVSVK
IKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRVIKKEISAGMTVDTEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKVRKAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LTGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFKETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSL
VIDTPRIRKQTRPFSATKDELAELSEVESEGDEKPKLRRPCDRSNGYGRTECFRVEKNLL
VYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGSEFQKVFDGTDASEIDVWVPEPDHSEVPAEWWDADADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAPTL
FKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQQ
VQPAFPVQTSMIQLPYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGR
FDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERASR
TLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTD
YHILRDPELSFMSAQRNYNQNKVTLSRTSTPLLHQYQMALSASPLTPQSRLSDAKVNAFE
DTKAKNENLKEDPQSSEDESMSTEETQTILKSEPLSPKNGTPIQITDHRPSVKAETDRRM
VAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSG
SSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTPHIKAYDEESVA
SLSTTQDETQDSFQMNNGTPNSGYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWP
SARRSYDSTTVASFYTTKLLDSSGAAAEYSEPSAPTPPLAAVKEEYDQSPQLSKVKKHVR
EKEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLRELQNASETSLVNFP
KSLPKSGTSSHLTASANGVIVDSQPAVKKRRGRRKNVEGVDVLFMNRNKQPNHVNPGINS
CQIAAGINPALTYTQSQGMLDAESPVPVINLKDGTRLAGDDAPKRKDLERWFKEHPGYVE
DSGACIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLK
DLCRFLKENPEYGVAPEWGEVVKQSGFLPEGMFERILTGPVVREEVSRRGRRPKSEAAKA
TAAATSAGAAISPLLANGLLPAVELPGLQALQHNLHNLQSLQVTAGLMGMPAGLAAAGET
KNVAAMFPMLLSGMAGLPNLLGMGGLLTKAAESVSEEKKGNDSKETDTKKERTEDQNTDT
GGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFDVQN
SESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDSTSSSS
EDSDSSDED
NT seq
8670 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggattgtcagatgatgcctttgttcaaccaggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcactgaaccatgtgcaagatgctcaa
aatcaacaaaagatgagtgaatttgatcagctgaatcagtatgattcactgaagcttcac
tcagtaaatcagtcttttaatagctcagctgacaatgtcttatcaccacactctcaattc
aattgttcaccagttcatccacaaaaccagtccaatgggatgtttccagatgtggctgat
ggtagtcctatgtggggtcatcaaactgccacaactgtttcgaatcaaaatgggtcccct
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcgctacggccgcagcag
agcaggaacaacacggggcaggatgctctgagtcagccaaaagacttcatggaagttaac
gtgtctacttccctcagagtcagtgttaaccacccaccttcagtttctaatccatcgact
tcacagcagcctctgtctgttcaacagttttctcaaactgcaagtgcttcaatacatttt
tgtgggaatcaagaaggaaattttgatggacagtccccaactattactccatgttctgtc
agtaacagtcaacaattttcatctccgtattcctactctaataatcacatttctcctacc
ggccttcttcagcctacaacagccctttctactagccagcagacacactctatctctgac
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaaacaactgagcac
atgttgaatcctaatacacctttgaattcaagtacttttcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcgaaactctctcctgtgaatattaattttccagcctct
actggttctgcttctcagataagccatttcacagaccctattgaaagcaatggttttaca
tctttagatgacaacttacttcatcaggtggagactcacagtgaaccattcacaggactt
gacccggatgacctcctgcaggaagaccttctgccccagttcgatgactctgcctttgtt
caggatagcacaagccatgttctagagcatgacctagaacaccacataaccccacagcaa
gtgacaccaccatccgaacccgtccgggctccgtctcagagtcagatccatccttggcat
tctgcagtttccaatcagcacctgcaaggcagaagtcgtgcagccttacaaggacagcct
ccttccaagaagaccgatggttcaggatcatatactaagatgcagaatacccaggtgagg
gcaacgtctgaaaagaagcagaagaaaaaaacagactcggaaagtaaacaagagaaagcg
aatcgcataatatctgaagcaattgcgaaggcaaaagaaagaggagagagaaacattcca
cgtgtaatgagccctgaaaacttccccagtgtttcagctgaaggaaaagaggaaaagaag
ggtagaaaagttaaatccaagccaaaggataaggagtgcaaaaagccgaaaacgggttcc
tcatccaaaattaaggagaaaacaaaaattggaaagctgatcatcacactgggcaaaaag
cagaaaaggaaaaacgaatcttcagatgaattgtctgatgctaagcagactccacagcag
ccactgaaagatgaagattcacagaagagaagatcaaatcgtcaagttaaaaggaaaaaa
tatgctgaagaaggagaagggaaacagtcagaagaagaagcagctaaagtttctgttaaa
atcaagaagaattctgcccctttacctgctgaacagcctttacaattatttgtggaaaat
ccaagtgaagaagatgcagcaattgtagacaaaatcttatcctccagggtaataaagaaa
gaaatatctgctgggatgacagtagacacagaagaattttttgtcaaatacaagaactac
tcatatctccactgtgagtgggccacagaacaacagcttttaaaggataaaagaatccag
cagaaaataaagcgattcaaagtaaggaaagcacaaagagctcacttttttgcagatatg
gaagaggaaccttttaatcctgactatgttgaagtagatcgggtattagaagtgtctctt
tgtgaagataaagacactggtgagcctgttatttactatttagtaaaatggtgttcattg
ccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaagaa
tttgaacaattgcaagcttccaggcctgactcaaggagattggaccgaccacctccaaac
tcctggaagaagatagaacagtccagggaatataaaaatggcaatcagctcagggaatat
caactggaaggacttaactggcttctattcaactggtacaataggcgaaattgcatttta
gcagatgaaatgggccttggcaaaaccattcagtccattacattcctgtatgaaatcctc
ctgacgggtataagaggccctttcctgatcatagctccgctctccactataacaaactgg
gagagggaattccgcacgtggactgacctgaatgttgtggtgtaccacggcagtatgatc
agcaggcagatgattcagcagtatgagatgtacttcagggactcccagggccgtattgtt
cgaggtacctacaggttccaggccattatcacaacttttgaaatgattcttggtgggtgc
ccagaattaaatgcaattgagtggcggtgtgttattatcgatgaagctcacagactgaag
aacaaaaactgcaaacttttggaaggactaaaattaatgaaccttgagcataaagtgctg
ttaacaggtaccccattgcagaacacagtagaagaattatttagcctccttcattttctg
gaaccattgcgttttcctgctgaatctacattcatgcaagagttcggagaccttaaaaca
gaggaacaggttcagaaactacaagctatcctgaaacccatgatgctcaggagattaaaa
gaagatgtagaaaaaaagctggctcctaaggaggaaaccataattgaagtagaactaact
aatattcagaagaaatattaccgagcgattttggagaaaaattttgctttcttatccaag
ggagcagggcaggcaaacgtacccaatctggttaacactatgatggaactcagaaagtgt
tgtaaccacccttatctcatcaaaggtgctgaagagaagatccttggagagtttaaagaa
acatatagtccaagtgctcctgacttccacctgcaagcaatgatccagtctgctggtaaa
ttggttcttattgataagcttcttcccaaaatgaaagcaggaggccacaaggtccttatc
ttctctcaaatggtgcgctgccttgatattttggaagattaccttatacataaaaggtac
ctgtacgagcggattgacgggcgcgtgcgagggaacctgcggcaagctgccatcgaccgc
ttcagcaaacccgactcggatcgcttcgtcttcctcctctgcaccagggctgggggcctg
ggcatcaacctgactgcagcagacacctgcatcatttttgattctgattggaatccccaa
aatgacctgcaggctcaagcccgatgccacaggattggtcagaacaaagcagtgaaggtc
tacagactgatcacacggaattcctatgagagagagatgtttgaccgagcaagtctcaaa
ctgggactggataaggctgtcttgcagagtatgagtggaagagaaaacagtgttggtggt
atccagcaactctccaaaaaagaaatagaagatttgcttcgaagaggtgcctatggggcc
attatggatgaagaggatgaaggctccaagttctgtgaggaagacattgaccagattctg
cagcgtcggactaaaaccatcacgattgaatccgagggaagaggctccacgtttgccaag
gctagttttgttgcatccggaaacaggactgatatttcactagatgatcccaacttctgg
cagaaatgggccaaaaaagcagaaatagatatcgatgctatcagtggtagaaacagcctt
gttattgataccccaagaatcaggaaacaaactcggcccttcagtgcgacaaaggatgag
ctggcagagttgtctgaggtggagagtgagggtgatgaaaagcccaagctgcgccggccg
tgtgaccgctccaatggctatggaaggacagagtgcttccgtgtggagaagaacctgctg
gtctatgggtggggtcgatggagagaaattctgtcccatggtcgcttcaagaggcagctg
aatgaacacgatgtggagataatctgccgagccctgttagcctattgtcttgttcactac
agaggggatgagaaaataaagagttttatttgggatcttattaccccaacagaggatggg
caaacacgagagttacagaaccaccttggcttatcagcccctgtgcctagaggaagaaaa
ggaaaaaaagtgaagacccaggctagcacttttgatatacacaaagcagaatggcttcga
aaatacaatccagagcatctgttgcaagatgaaggatacaaaaagcacataaaacaccat
tgcaacaaggtcttacttcgagtaagaatgctgtattacttgaaacaagaagtcattggt
agtgaattccaaaaggtctttgatggaactgatgccagcgaaattgatgtttgggttcct
gagccagaccactctgaagttcctgctgagtggtgggatgcagatgcagataaatctctt
ctaattggagtttttaaacatggttatgaaaaatacaacactatcagagcagacccagct
ctttgcttcttggaaagggtgggaaaaccagatgagaaagcagttgctgctgagcagaga
gcaaatgattatatggatggggatgtagaagatccagaatacaaaccagcaccaacactg
ttcaaagatgacatagaggatgatgtttcatctccaggtgatctcgtaatagcagatgga
gatggacaaatgatggaaggagacaaaatctattggcccactcagtctgccttaacaaca
cgtttgcgccgcctgataacagcgtatcaacgaaccagtaaaaacaggcaggcccagcag
gtccagccagcattcccagtacaaaccagtatgatacagcttccgtatgaagaagctgca
ctaaatccaaagatggctgctaagattgaaagacagcaaagatggacaagaagagaagaa
gctgacttttacagagttgtgtccacatttggagtggtgtttgaccctgaaaggggacgg
tttgactggaccaagtttcgagcgatggctcgtctgcacaagaaaactgatgagagcctg
gagaaatacctgtatgcatttatgtcaatgtgcaggagggtctgtcgtctcccctcgaaa
gaagagcttgtggacccaaacatttttatccagcccatcacagaggagcgcgcttcccgg
actttgtaccgcattgagctgctgcggaaagtgcgagaacaggctctcagacacccccag
ctgttcgagcgactgaagctgtgccagccaaacccagacctacctgtctggtgggaatgt
gggactcacgacagggatttacttattggagctgctaagcacggagttagcaggacagat
tatcatattcttcgtgatcctgaactctcatttatgtctgcccagaggaactataatcaa
aacaaagtgactctctcaaggacttctactccactcttgcaccagtaccagatggcatta
tctgcttctcctcttacacctcagtcaagactgtcagatgcgaaagtgaatgcttttgag
gacacaaaagctaaaaatgaaaatctgaaagaggaccctcagtcttctgaagatgaatcc
atgtctacagaggagacacagacaatactgaaatctgaacctttgagtcccaagaatggc
accccaatacaaattacagaccacagacctagcgtgaaggctgagacagacaggcgcatg
gtggcagcaaggacagagcctctaactccaaacccagcttccaaaaaacagagagtcagc
aaaagggggtctgactctagctctgactcagactctgactcagatagatcatcctgttct
tccaggtcatcatcttcatcctcttcgtcttcctcatcatgttcccactctcgatctggc
tctagctcttcatcatcttcatcttgttcttcagcatcttcatcctcttcctcatcgtcc
tcatcatcatcgtcatcgtcatcatcatcgtctgaagagagtgatagtgatgaagaggag
gcacagaaacgtgcagaaggaactccacatataaaagcctatgatgaagagagtgtggcc
tctctgagcaccacacaagatgagacacaagacagtttccagatgaacaatgggacacca
aattctggttatctcctacaaggtggatacatgttggctgcatcctactggccaaaggat
cgagttatgattaaccgactggacagcatttgtcagacagtattgaagggtaaatggcct
tcagcccgaaggagttacgacagcaccacagtggcatcgttctacaccaccaaactcctg
gacagctcaggggcagctgcagagtacagtgagcccagtgcacccacacccccccttgca
gctgtaaaagaagaatatgaccagtctccccagctgtcaaaggtgaagaagcatgtacga
gaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcagaag
cagggactgtctcagaaaaggccatttgaaagcgaggagggtgcattgggtcagcagcaa
tatctggctcggctacgtgaactccagaatgcttcagaaaccagccttgtcaacttccca
aaatcacttcccaaatcaggtacttccagtcacttaacagccagtgccaatggagtcata
gttgacagtcagcctgcagtcaaaaagagacgaggaagaaggaagaatgtggagggggtt
gatgtcctctttatgaatagaaataaacagcctaaccatgttaatccaggtattaactcc
tgccagattgctgcaggaataaacccagcactcacttacacacagtcccaaggtatgctt
gatgcagagagtccagttcctgttattaacctaaaagatggaacaaggcttgcaggtgat
gatgcccctaaaagaaaagatttagaaaggtggtttaaagaacatcctggatatgttgaa
gattcaggagcatgtattcctaggatgcagctgcacgatgggaggcctaaacaaaaaaga
caccgttgtcgaaaccccaataaactggatgttaacagtttaactggtgaagaacgtgtt
cagctcattaatagaagaaatgcaagaaaggttggaggtgcatttgctccccctcttaag
gatttgtgcaggttcttgaaagaaaatccagagtacggagtggctcctgaatggggagaa
gttgtaaaacagtctggcttcctccccgagggcatgttcgagcgcatcctgacgggcccg
gtggtgcgcgaggaggtgagccggcgcgggcggcgccccaagagcgaggccgccaaggcc
acggcggcggccacctcggccggcgcggccatcagccccctgctggccaacgggctgctg
ccagccgtggagctgcccggcctgcaggcgctgcagcacaacctgcacaacctgcagtcg
ctgcaggtgacagccggcctgatgggaatgccggctggcctggccgccgcaggagagacc
aagaacgtggctgccatgttccccatgctgctctcggggatggctggcttacccaacctg
ctgggcatgggaggactcctgacaaaggcggcagaatccgtgtcggaggagaaaaaggga
aatgattccaaggagacggatacaaagaaagaaaggacagaagaccaaaatacggatact
ggtggtgaaaactctgtttcaagttctccttcaacatcctctgccgctgcagctgccaat
cctctctctcttaaccctttacttctgtccaacatactttacccagggatgcttctcact
ccaggccttaatcttcatatcccagctttgtctcagtctaatattttcgatgtacagaac
agtgaaagcaatgacacaggctcagccaagcccacagaagaaaaggaggaaaattctagg
gttagagatcaggaagacaaagggggaacagagccaagctctcacaatgaaaacagcaca
gatgagggttcagagaaagcagatgcttcatctggatctgacagtacatcatcttcatct
gaggattcggattcgagcgatgaagactga
DBGET
integrated database retrieval system
