Ficedula albicollis (collared flycatcher): 101806723
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Entry
101806723 CDS
T02815
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fab03041
]
101806723
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101806723
Spliceosome [BR:
fab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101806723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
AAA_19
HA2_N
nSTAND3
Ank_2
ATPase
Ank_4
AAA_22
Ank
PhoH
AAA_23
AAA_7
NPHP3_N
AAA_16
ResIII
AAA_30
SRP54
AAA_29
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
101806723
NCBI-ProteinID:
XP_005061220
LinkDB
All DBs
Position
Z:48686973..48717520
Genome browser
AA seq
1367 aa
AA seq
DB search
MNSRRRELEFPSSFTRTERAFVHRLCHSLGLISKSKGKGANRYLTVRKKDGSELKRAVMT
CALTPGTKHAVHTLIRNFPVTNKEQTELLPKKERGNAYVVESENKEVNKTSGRLSDGIPQ
VPVKRGESEFDSFRQSLPVFEKQEEIIKIIKDHKVVLIVGETGSGKTTQIPQFILDDCHK
NGTPCRIFCTQPRRLAALAVAERVAAERREKIGQTVGYQIRLESRVSPKTLVTFCTNGIL
LRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQSQANLKLIISSAALDADLF
IRYFGCCPVIHIQGRPFEVKEMFLEDILRSTGFTSKEMAKYKKEKQQDEKQQSTLTEWCS
AQDNNSKLEPQRPRPVPRATEECRLLGDDGDTVFNQLTEKDVNCLEQWIIKEMDSCLSDI
WLHKDIDAFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGANIHCR
SSNGWMAVDWAKRFGQTEVVDLLESYSASAGFGNLDESSLVQTSGNDLSAEDRELLTAYH
HSFDDEKVDLDLIMHLLYNICHNCGTGAILIFLPGYDEIVSLRDRILFDDRRFADDAHRY
QVFMLHSNMQTSDQKKVLKSPPPGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDA
LSCVTMLKMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFENMLEFQTPELLRMPLQEL
CLHTKLLAPINCPVVDFLMKAPDPPPALIVKNALQMLKTIDAMDPWEDLTELGYHLTELP
VEPHLGKMVLCAVVLKCLDPVLTIACALAYRDPFVLPTLASQKRAAMLCRKRFTAGTFSD
HMVLLRAFQAWQKARSDGWERAFCEKNFLSQATMQIIVGMRTQLLGQLRASGFVRARGGA
DIRDVNANSENWAVVKAALVAGMYPNLVHVDRQSLVLTAPKEKKVRFHPTSVLSQPQYKK
VPPLNGQTAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTPITVALFCGPARLPSNALQA
SASCQGDRVSSDSSDSEMEDRATSNVSLLKLDEWLHLKLDSEAAGLLLQLRQKWHSLFLR
RMRAPSKLWSQADEATVRAVVAVLTAEEQSAGLQQPSGIGQRPRPLASEDHLLASTWRST
NTRTSTAETEFSDPSNAGKVLMRSARPILHQPRKYKRKNILYSKQTSDDRSDLSSVKSAD
SSSFPSPCASPYSPISGKASKSPSPRQNMPVRYFIMKSNNLQNIEISQQKGIWSTTPSNE
RKLNGAFWESSMVYLIFSVQGSGHFQGFARMDSSIGSEKSQDWGSAGFGGVFKVEWIQKE
SIPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLKLWDHIPSE
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgaactcccggcgccgagaactggaattcccatcctctttcactagaactgagagagcg
tttgttcatcggctctgtcattctcttggactgatatcgaaaagtaaaggaaaaggagca
aatcgatacctaactgtaagaaaaaaagatggatcagagctaaaacgtgcagtaatgact
tgtgccttaactcctggtacaaaacacgctgttcatactttaattcggaattttcctgtc
acaaataaagaacaaacagaacttctgccaaagaaagaacgaggaaatgcctatgttgtt
gaatctgaaaacaaagaagtgaacaagacaagtggacgacttagtgatggtattccccag
gttccagtgaaaagaggggaatcagagtttgattccttcagacaatcactaccagttttt
gaaaaacaggaagaaattattaaaataataaaggaccataaagttgttttgattgtagga
gagactggatcaggaaaaactactcaaatcccccagtttattcttgatgactgtcacaaa
aatggaactccctgccgcatattttgcactcagccaagacgcttggcagcacttgctgta
gctgaaagagtggcagcagaaagaagagaaaagattggccagacagttggttatcagatc
cgattagaaagcagggtttctccaaagacactggtaaccttttgcactaatggcatactg
cttcgcacgctgatggcaggagacagcaccctgtcaactgtgacacatgttattgtggat
gaagtgcatgaaagggataggttcagtgacttcttgctaataaaactgagagatgtgttg
caaagccaagctaatttaaaactaattatttctagtgctgctctagatgcagatctcttt
attaggtattttggatgttgcccagtaatacacatccaaggaagaccttttgaagttaaa
gagatgtttttggaggacattttacgaagtactgggtttacaagcaaagagatggcaaag
tacaaaaaagagaagcagcaagacgaaaaacagcaaagcactcttactgagtggtgttct
gctcaagataataatagtaagctggaacctcagagaccaagacctgtcccaagggcaact
gaagaatgtcgtctgttaggtgatgatggtgacacagtatttaatcaactgactgaaaaa
gatgtgaattgccttgaacaatggataataaaagaaatggattcttgtctttctgatatc
tggttgcataaagatattgatgcctttgctcaagtgttccatctcattttaactgaaaat
gtcagcgttgattataggcacagtgaaaccagtgcgactgcactaatgattgcttcaggg
agaggctttttgagtcaagtggagcagctgatcagtatgggagcaaatatccactgcaga
tcatctaatggctggatggctgtggactgggctaagcgctttggacaaacagaggttgtt
gacctgttggaatcctacagtgcttcagcagggtttggaaatctggatgaaagttctctg
gtccaaacaagtggtaatgaccttagtgcagaggacagagaactgttgacagcttatcat
cacagttttgatgatgaaaaagtggatctggacctcattatgcacttactttacaacatc
tgtcataactgtgggactggggcaattttaatatttcttcctggatatgatgagatagtt
agcctgagggaccgtattctttttgatgacaggagatttgctgatgatgctcacagatat
caggttttcatgcttcattcaaatatgcagacttcggatcagaagaaagtacttaaaagt
ccacctcctggtgtgcgcaaaataattctttctacaaatatagcagaaaccagcataaca
gtcaatgatgttgtatttgttattgactcaggcaaggtgaaagagaaatcttttgatgca
ctgagttgtgttacaatgctaaaaatggtgtggatttcaaaagccagtgctatccagaga
aaaggcagggctgggcgctgtcagcctggagtctgttttcgtctcttcagtaggctccgt
tttgagaacatgttggaatttcagactccagaacttctaagaatgccacttcaggagctt
tgtttgcacacaaaacttctggctcctattaattgtccagttgttgacttccttatgaaa
gctcctgatcctccaccagctttaattgtgaaaaatgctctgcaaatgctcaagactata
gatgccatggacccttgggaagatctcactgaacttggttatcatctcacagaattgcca
gtggagccacacctcggtaaaatggtgttgtgcgccgttgttttgaagtgtctggaccct
gttcttaccattgcttgtgctcttgcctaccgagacccttttgtgctgcccacactggcc
tctcaaaagcgtgcagccatgctgtgtaggaaacgttttactgcgggaaccttcagcgac
cacatggtgcttctcagggctttccaggcatggcagaaggcccgcagtgatggctgggag
agagccttctgtgaaaagaacttcttgtctcaagccacaatgcagatcattgtaggaatg
agaacacagttgcttggccagcttagagcctcaggttttgttagagccagaggaggagcc
gatattagagatgtgaatgctaactctgaaaactgggctgtagttaaagctgctttagtg
gctgggatgtatcccaatcttgtgcatgtagacagacagagcctggttttaactgcacca
aaggagaagaaagtgcgatttcatcctacctctgttcttagtcagcctcagtataaaaag
gttcccccattgaatggccaaactgcagctgttcaggccctccctactgactggctgata
tatgacgaaatgacaagagctcacaggatagcaaatatcaggtgctgttctgttgtaaca
cccatcactgtggctctcttctgtggaccagctaggttaccaagtaatgctttacaggca
tctgcatcctgtcaaggagacagggtatccagtgatagcagtgacagtgagatggaagac
agagcaacttctaatgtatcgctactgaagctagatgaatggctccacctcaaactggac
tctgaagctgctggtttgctattgcaactcagacaaaagtggcatagcttatttctgcgt
cgtatgcgagctccttctaaattgtggtctcaagctgatgaagcaacagtaagagcagtt
gtagctgttttgactgctgaagaacagtctgcaggtttgcagcagccttcaggaattggt
cagagaccaagacctctggcttctgaagatcatcttttagcatctacatggaggtcaacc
aacaccaggacaagtacagcagaaactgaattctctgacccctctaatgctggaaaagtt
ctaatgaggtctgcacgtcccatacttcatcagccaaggaagtacaaacgaaaaaatatt
ttgtactccaaacaaacttctgatgacaggtcagatctatcatcagtgaagtctgcagac
agcagtagctttcctagcccctgtgctagtccatattctccaatatctggaaaggcttcc
aaatcaccttcaccaagacaaaatatgccagttcggtactttataatgaaaagtaacaac
ttgcagaacattgagatttctcagcagaagggtatatggtccactacgccaagtaatgaa
cgaaaactgaatggagccttttgggaaagcagcatggtttatttaatattttctgttcaa
gggtctggacacttccagggttttgctagaatggattcatcaataggatctgagaaaagt
caggactggggatctgctggatttggaggtgtatttaaagtggaatggatccaaaaagaa
agcattccttttcagtttgcacatcatttgctcaacccttggaatgacaataagaaagta
caaataagcagagatggccaggagctggaaccacaagttggggagcagttgctgaagctt
tgggatcatattccttcagaatga
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