Ficedula albicollis (collared flycatcher): 101807325
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Entry
101807325 CDS
T02815
Symbol
HFM1
Name
(RefSeq) HFM1, ATP dependent DNA helicase homolog
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fab03036
]
101807325 (HFM1)
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
101807325 (HFM1)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Meiosis-specific proteins
Others
101807325 (HFM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
101807325
NCBI-ProteinID:
XP_005050421
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All DBs
Position
8:complement(19181971..19213923)
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AA seq
1382 aa
AA seq
DB search
MVFVGGRKHEKFIQQCKSKTEEVEDESSAPVHFGIAPGKEVLQLSLGERDKISFQHENLK
VVSSFLSFDENKSKRVIDFSQQLQNKALIENSDDESVHSTLRKSLFKKSDNMHKNTEFKA
GSVDVKEIGSYLNTSENMKKMTKEGFLRNNHHAPITKDSDFTLHRVNNEEIVSENGIKIQ
SFSNASEILDMTGTTGRKLEILRAVTEIPTQFRSIFKEFPYFNYAQSKALDDLLYTDRNF
VICAPTGSGKTVMFELAITRLLMEAPLPWLNIKVVYMAPIKALCSQRFDDWKEKFGPIGL
TCKELTGDTLMDDLFEIHHADIIITTPEKWDSMTRRWRDNSIVQLVRLFLIDEVHVIKDE
SRGATLEVVVSRMKTIQSSLWRLLEKHDTVPPLRFVAVSATIPNTHDIAEWLSDSKMPAV
CLKIDEDQRPVKLRKIVLGFPCSDNQTEFKFDLTLNYKIASIIQTYSEQKPALVFCATRK
GVQQAASVLAKDAKFLLSIEQKQRLQGFANSLKDSKLRDLLTYGVAYHHAGMEISDRKTI
EGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYVGGVFQEYSETDILQMIGRAGRP
QFDTTATAVIMTRCSTRERYIQMLNGADIIESSLHRHLVEHLNAEIVLHTVTDVSVALEW
IRSTFLYIRALKNPTHYGFSSGLGKVGIEAKLQELCLKNLHDLSSFDLIRMDEANNFKPT
DTGRLMAWYYIAFDTVKQFFTIKGTETLNELITMISNCSEFVDVKLRTNEKKILNTLNKD
KDKITIRFPMEGKIKTREMKVNCLIQAQLGCIPIQDFTLTQDTGRIFRNGLRVTRWLSDF
LASSKNNFSALLNSLILAKCFRCRLWENSLHVSKQLEKIGVSLSNAMVNAGLTSFKKIED
INARELELILNRHPPFGNQIKESVLHLPKYELEIEQLPKYSDTLAEILVTVKLTNYEQLQ
TKRTAPDFHYVTLVIGDDDNQVIFNQKIMDSVLLKTGNWMKKIEVKRALKSEEISINLIS
SDYVGLDIQRAYTAFYLTPKPEGRKVVTNQKLKAKSTLDTCYGSPQSLPAAKADTGGRSK
QEFDYKKYGNRECNHRCKNKDVCGHDCCKTGVPPKSQMNGDTKVSLYLADLRSRNSVSSI
PPVKRLKMQMLNQAENVDLKQFVFTPKSLLPALPRSSNKLSSFSPSVVQIDNINTLEVSQ
KELQSWNCRKSNALNVNFDLRDDIWDDIDDEKLIFASNFVSRELELGNICLPDECQPLCQ
YTTSKATHDISKDSCTVQDNTNIQNSDISVASSTSKVNLSVQNINTTLLSFQEKKHSSLS
QGQKNVQSSSIPEIISDSSKFTRKEDFFIFTKEQEKEVDPRYLLDDESNDVKPFLGIFDG
IL
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggtttttgtaggagggagaaagcacgagaagtttatacaacaatgtaagagtaagaca
gaggaagtagaagatgaatcatcagcacctgttcattttggcatagcccctggaaaagaa
gtcctgcaattaagtctaggagaaagagataaaattagttttcagcatgaaaatctgaaa
gtggtttcatcttttctctcctttgatgaaaataaatctaaaagagtaatagatttttct
cagcaactgcaaaataaagctttaattgaaaacagtgatgatgagagtgtccattcaaca
ttaagaaaaagcttatttaaaaagtctgacaatatgcataaaaatacagaatttaaagct
ggttctgttgatgtgaaagaaattggcagttacttgaatacaagtgaaaacatgaaaaaa
atgacaaaagaaggttttttgagaaataatcatcatgctccaataactaaagactcagat
tttactttgcatagagtaaataatgaggagattgtgtctgaaaatggaattaaaattcaa
tcattttctaatgcttcagagattctggatatgacaggaactacaggaagaaaattggaa
attttgagggccgttacagaaataccaacccaatttagaagtatttttaaggagttccca
tattttaactatgcacagtcaaaagctttggacgatcttttatatacagataggaacttt
gtgatttgtgctccgactggctctggaaagactgtaatgtttgaactagctattaccaga
ttactcatggaagccccactgccttggttaaatattaaagttgtttacatggctccaata
aaagctctctgcagtcagcgttttgatgattggaaagaaaaatttggacctataggactc
acctgcaaggaactgactggagatacactgatggatgatttatttgaaatacatcatgct
gacattattatcactacacctgaaaagtgggatagcatgactagaaggtggagagacaac
tctatagtccagcttgtgcgactgtttctcattgatgaggtacacgttataaaggatgaa
agccgcggtgcaactttggaagttgtagtcagtcggatgaaaactatccagtcttctctt
tggcgtctcttagagaagcatgataccgttcctcccttgagatttgtagctgtttctgca
acaatcccaaatactcatgatattgcggaatggctttcagatagcaagatgcctgctgta
tgcctgaaaatagatgaggatcaacgaccagtgaagctacgcaaaattgttcttggtttt
ccttgcagtgacaatcagacagaattcaaatttgacttaactcttaactacaagatagct
agcattatacaaacatactcggagcaaaaaccagcacttgtgttttgtgccacaagaaaa
ggagtacagcaggctgcttctgttcttgcaaaagatgctaaatttctactgagtatagaa
cagaaacaaagattacaggggtttgcaaattcattgaaagactccaaactgagagacctt
ttaacatatggtgtggcttatcatcatgcgggtatggagatatcggacagaaaaacaatt
gaaggagcttttactgttggagacttgccagtactttttactactagcaccttagctatg
ggagtcaatctacctgcacacctggtggttataaaatccacaatgcattatgttggagga
gtgttccaagagtacagtgaaactgatattctgcaaatgattgggagagctggaaggcct
cagtttgacactacagctacagcagttattatgactcgttgcagtaccagggagagatat
atacagatgttaaatggtgctgatataatagagagcagcttgcacaggcaccttgttgaa
cacttaaatgcagaaatagtgctgcatactgtcacggatgtcagcgtagctttggaatgg
atacgatcgacattcttgtacattagagccttaaaaaatccaactcattatggtttttca
tctggattaggcaaagttggaattgaagcaaaattacaagaactgtgtctgaagaactta
catgatttatcatcttttgatttgatcaggatggatgaagcaaataatttcaaaccaaca
gatactggaagattaatggcgtggtattacattgcatttgatacagtgaagcagtttttc
acaattaagggaactgagactttaaatgaattgattacaatgatctccaactgctcagaa
tttgtggatgtgaagttaagaacaaatgaaaagaaaatattgaacactttgaataaagac
aaagacaaaataactatcaggtttccaatggaggggaagataaaaacaagagaaatgaaa
gtaaactgtctcattcaggctcaactgggatgtattcctattcaagactttactttgaca
caagatactggcagaatatttagaaatggcttgagagttactagatggttatctgacttt
ctggcatcatctaagaacaacttttcagctttattaaactctttgattttagcaaagtgt
ttcaggtgcagactttgggaaaattcacttcatgtgtctaaacaattggaaaaaattggt
gtatcactgtcaaatgctatggtaaatgctgggctgacatcatttaaaaaaattgaagac
ataaatgcaagggagcttgaattgattttaaacagacatcctccttttggaaaccagata
aaagagtctgttttgcaccttccaaaatatgaacttgaaattgaacagcttcccaaatac
agtgacacattggctgaaatcttagtaaccgtcaaattaacaaactatgagcagctacag
acaaagagaacagcaccagacttccattatgttacgttggtcataggagatgatgacaac
caagtcatttttaatcagaaaattatggattctgtgctgctgaaaactggaaattggatg
aagaaaattgaagttaaaagagcacttaaatcagaagaaattagtataaatttaattagt
tctgattacgttggccttgatatacagcgagcatatacagccttctacttaacgccaaaa
ccagagggacgtaaggtggttacaaatcaaaaattgaaagctaaatctacacttgataca
tgttatggctcaccccaaagcctgcccgcagcaaaagcagatacaggaggcagatctaaa
caggagtttgattacaagaaatatggaaacagagaatgcaaccaccgctgtaaaaataaa
gatgtgtgtgggcatgactgctgtaaaactggagtacctccaaagtcgcagatgaatgga
gacacaaaggtttccttgtacctagctgatttaaggagcaggaactcagtgtcatctata
cccccagtaaaacggctaaagatgcagatgttaaatcaagctgaaaatgtggatctcaaa
caatttgtttttacacctaagtctttactgccagccttgccaaggtctagcaataaactg
tcatctttctcgccttcagtggtccagatagataatattaataccttagaagtatctcag
aaagaactgcaatcctggaattgtagaaaaagtaatgctttgaatgtgaactttgacctg
agagatgatatttgggatgatattgatgatgagaaattgatatttgctagtaattttgtc
agtagagaattagaacttggaaatatctgcctcccagatgaatgtcaacctctctgccag
tatacaacaagcaaagccacacatgacatttcaaaagattcatgcacagtacaagacaac
accaatattcagaactcagatatttctgtggccagtagcacatcaaaagtgaatttatct
gtacagaatataaatacaactttgttgagttttcaggaaaaaaagcattcaagtctttct
caagggcaaaaaaatgtacagagttcctccatcccagaaataatctcagactcttctaaa
ttcactaggaaagaagatttttttattttcacaaaagaacaggaaaaagaagtagatcct
agataccttcttgatgatgaatccaatgatgtcaagccctttcttggaatatttgatggt
attttgtaa
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