Ficedula albicollis (collared flycatcher): 101807335
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Entry
101807335 CDS
T02815
Symbol
CIITA
Name
(RefSeq) class II major histocompatibility complex transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
101807335 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
fab01001
]
101807335 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
fab04054
]
101807335 (CIITA)
Enzymes [BR:
fab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
101807335 (CIITA)
Protein kinases [BR:
fab01001
]
Serine/threonine kinases: Other
TAF1 family
101807335 (CIITA)
Pattern recognition receptors [BR:
fab04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
101807335 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_9
LRR_8
LRR_14
NB-ARC
RsgA_GTPase
NPHP3_N
AAA_19
nSTAND3
AAA
Motif
Other DBs
NCBI-GeneID:
101807335
NCBI-ProteinID:
XP_016157317
LinkDB
All DBs
Position
14:6474266..6493501
Genome browser
AA seq
1104 aa
AA seq
DB search
MDSVFVPENGYLDLLHSDIDPLHLCTFFDPKSSGDEEGDFSTDLEVDASNYEQVNNMDFP
YENEDGFYPCTNTTDAYAKIAELVEYVLKDQQEKQVEDIFAGNLILDDIAAENTEKFPDI
KMQTCLKRTFLGSAAESYCDVSEPKYKKIMEDPAAPAGNGSFFPMHLNSHPVSCTSLTNQ
HMSFSVPAAHGLERSLIIPGLSEPLPSECLPVSVKGNQENPGLGGPPQQILNFVLENGIS
DVIVYPVLTSSMETFISPSFPVKLCDLEKFQEVQDSIIPSEELFNKPEQVETFCSSLKDY
FRDTCKSVTMEQEINLDHLFIDGTLVQGQTETKTGKNSAKAMEKELVTCSLQEKEKIAID
RSQIFQIPQRKDLETKVIVVLGKAGMGKSILIQKICQDWSNGEFSQFEFVFWFDCKQISL
PEKQYSLKELLLDFFVKPQEGSKDIFEYILQNPDKVLLIFDGFKGLNDHENFPRCSASQP
EKDSCSIKELLSGLIQKKILNGCTLLFTARPKDKLYQHMSKVDKTIEIVGFSPQQRELYI
TKYFEESSYCDSALKLIKGCEYLFSHCYSPVMCRFVCFLCETVLEMGEKSLPSTLTEVFL
KFFHQKIMFMQTDVTTTKNQESLATLARVAWCLGEKHQSAMKSDLIPSEEVKEFALKYGF
FLPFAFPRHSNSEEDEFGSTFSDFVIQNFLCALHLLLAEELKDRNLTKYLSFLSKKKKPY
NWLDLMPRFLAGLVFLQGDPYFWSLSNEDEKQSTKKQKTLLKYIRRLQINTLCPERLLEL
LHCVYETQNNYLLQHVALRLEPDLSFLGIVLTPPDVHVLHSILKRSRKEFSLDLRNSSID
IQGLQALVSLKNVTSFRASLSDTVGLWKSLEQTKDYELLKASTEKFVLDPFKAKTMKDIS
DLSKLVEMQEKMRNCVQEASGCTSYEIPAIRNLRKLEFALGPACGLQGLLKLVKILAAFP
SLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQNKITDLGAENLATALPSLSS
LKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKITGVGAQQLTDSLRKCPHIKNL
LMWNPTIPYGVLEHLQQLDSRISV
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtatttgtgcctgaaaatggctaccttgatttactgcacagtgatattgat
ccattgcatctgtgtactttctttgatcctaagtcatctggagatgaagaaggtgacttc
tctacagaccttgaagttgatgccagcaactatgagcaggtaaataacatggatttccca
tatgaaaatgaggatgggttctacccctgtaccaacacgacggatgcttatgctaaaata
gctgaattagtagaatatgtgctcaaggatcagcaggagaagcaggtcgaagacattttt
gcagggaaccttattttggatgacattgctgctgaaaacactgagaaatttcctgacata
aagatgcagacatgtcttaaacgaactttcctaggctctgcagcagagagttactgtgat
gtttcagaacccaaatacaagaaaatcatggaagaccctgcagcacctgcagggaatggc
agtttctttcctatgcatctcaacagccacccagtgagctgcacctccctaactaaccag
cacatgtccttttctgttcctgctgcccatgggctggaaagaagcctcataattcctgga
ttgtcagaacctttgccctcagagtgcctaccagtcagtgtgaaaggcaaccaagagaat
ccaggcttgggaggtcctcctcagcagatacttaactttgttcttgaaaatggcatatct
gatgttatagtatatccagtgctgacgtcttccatggaaacattcatatctccaagtttt
ccagttaaattatgtgatttagagaaatttcaagaagttcaagattccataattccttct
gaagaacttttcaataaaccagagcaagtggaaactttctgttcatcacttaaggattat
ttccgagacacatgcaaatctgtgaccatggagcaggaaataaatctggatcacctgttc
attgatgggacacttgtccaaggtcaaactgaaaccaagactggaaagaatagtgcaaaa
gcaatggaaaaggagctggtaacctgcagcctgcaagagaaggaaaagatagccattgat
agaagccaaatatttcaaatcccacagcgtaaagacttggagactaaagtgattgtggtt
ctgggaaaagcaggaatgggcaaaagcattctcattcagaagatctgccaggactggtcc
aatggagagttttctcagtttgaattcgtattttggtttgactgcaaacaaataagcttg
cctgaaaagcaatacagcctgaaggaactgctgcttgatttttttgtaaaacctcaagag
ggaagcaaagatatttttgagtatatattgcaaaatcctgataaagtccttctgattttt
gatggttttaaaggattgaatgatcacgagaattttcctcgttgctcagccagccagcct
gaaaaggattcatgcagtataaaggagctgctttcaggactcatccaaaaaaagatactc
aatggctgtactttattattcacagcaagaccgaaagacaaactgtaccagcacatgtcc
aaagtggacaagactattgaaattgtaggattttcccctcagcagagagaattgtacata
accaaatactttgaagaatcatcctactgtgatagtgcactgaaattaatcaaagggtgt
gagtacttgttcagtcattgttacagtcctgttatgtgtagatttgtttgttttctctgt
gagacagtgctagaaatgggagagaaaagtcttccttcaactcttactgaagtcttcctg
aaattttttcaccagaagataatgtttatgcaaacagatgttacaaccacaaaaaatcaa
gagagtcttgctaccctagcccgcgtagcatggtgtcttggagaaaaacaccaaagtgcc
atgaaaagtgatcttattccttctgaggaggttaaagagtttgctctgaagtatggcttt
ttcctgccatttgcattccccaggcattcaaatagtgaagaagatgaatttgggagcacg
ttctctgattttgtcattcagaatttcttgtgtgcacttcaccttttgttagcagaagag
ctcaaggatagaaatctaacaaagtacctgtcttttctatccaagaagaaaaaaccttat
aactggttagatttaatgcctcgatttttagctggtttggtgtttctccagggtgacccc
tacttctggtctctttcaaatgaggatgaaaaacaatcaaccaagaagcagaagacactc
ttgaaatatattagaaggctgcagattaatactctctgtccagagaggttgctggagctt
ttacattgtgtttatgaaacacagaacaattatcttctgcagcatgtggccttaagactc
gagccagacttgtcttttctgggcatagttcttacaccacctgacgtccacgtactgcac
tctattttgaaaaggtcaagaaaagagttttccttggatttacgaaacagcagcattgac
atacaagggctgcaagccttggtcagcctaaagaatgtgacatcattcagggcctccctc
agtgacacagtcgggctctggaaatctttagaacagacaaaagactacgaactgctgaaa
gcatccacagagaaatttgttcttgatccctttaaggcaaagacaatgaaggacatcagt
gacctctccaagcttgtagagatgcaggagaagatgaggaattgtgtgcaagaagcatct
ggttgcaccagctatgaaattcctgccatcaggaacctcagaaaactcgaatttgcgctg
ggtccagcatgtggccttcaaggattgctaaaacttgtgaaaattcttgcagcatttcca
tcacttcagcatttagaccttgatgctctgagtgaaaatggcataggagatgaaggagca
aagagtctatctgaagtctttccaaccctgacatcactggaaacattaaatttatcacag
aataaaataacagatctgggtgcggagaacctcgctacagctctcccttccttgtcttcc
ttaaaaacactaagcttgtacaataacaacatctgtgattttggagcagaaaatctggca
aaggttcttcctgcaatgacatctttaagagtgctagatgttcagtataacaaaataact
ggtgttggagcccagcagctgactgacagcctacgaaaatgtccccatataaagaacttg
ctgatgtggaatcccaccattccctatggagttcttgaacaccttcagcagctggactcc
aggatcagtgtgtag
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