Ficedula albicollis (collared flycatcher): 101807720
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Entry
101807720 CDS
T02815
Symbol
DDX6
Name
(RefSeq) DEAD-box helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101807720 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101807720 (DDX6)
03036 Chromosome and associated proteins [BR:
fab03036
]
101807720 (DDX6)
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101807720 (DDX6)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101807720 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
101807720 (DDX6)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101807720 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
101807720
NCBI-ProteinID:
XP_005058612
UniProt:
U3K5F1
LinkDB
All DBs
Position
24:complement(66014..85803)
Genome browser
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNANTINNGTQQQAQ
SMTTAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKQ
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctatccagtcagaatgggcag
ttgagaggccctgtaaaacccagcgggggcccaggaggtggaggcacacaaactcagcaa
cagatgaaccagctgaaaaatgccaacacaatcaataatggcactcaacagcaagcacag
agtatgaccaccgctattaaacctggtgatgactggaagaagactttaaaactccctcca
aaggatttgagaatcaaaacttcggacgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaacgggagttgctgatgggaatttttgaaatgggctgggaaaaaccatct
cctattcaggaggagagcatccccattgctttatctggtagggatatcttggcaagagca
aaaaatggaacaggcaagagtggagcctacctcattcctttacttgaacggctagactta
aagaaggacaatatacaagcaatggtgattgttcctacccgtgaactagccctgcaggtc
agtcaaatctgtatccaagtcagcaaacacatgggaggtgccaaagtgatggcaacaact
ggaggaaccaatttgcgagatgacataatgagacttgatgatacagtgcatgtggtgata
gctacccctgggagaattctcgatctcatcaagaaaggagtagcaaaagttgagcatgtc
cagatgatagtattggatgaggcagataagttactgtctcaagattttgttcaaataatg
gaagacattattctcacgctacctaaaaacagacagattttgctctactcagccactttt
cctttgagtgtgcagaagttcatgaattcccatttacagaaaccctacgagattaatctg
atggaggagctgaccttgaagggagttactcagtactatgcctatgtcactgagcgtcag
aaagtgcactgcctcaatacgctcttttccaggctccagattaaccagtcgatcattttc
tgcaactcctctcaacgggttgaattgctagccaaaaagatctcccagctgggctattcc
tgcttctatatccatgctaaaatgagacaggagcaccgcaatcgtgtattccatgatttc
cgaaatggcttgtgccgcaatctcgtttgcactgatctgtttacccgaggtattgatatc
caggctgtgaatgtggtgataaactttgatttcccaaagctggcagaaacttacctccat
cgcattggcagatcaggtcgctttggtcatcttggcctggccatcaacttgatcacttat
gacgatcgattcaacctgaaaagtattgaggagcagttgggaactgaaattaaacccata
ccaagcaacattgacaagagcttatatgtggcagaataccacagtgaacctgtagaagat
gaaaaacagtaa
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