Ficedula albicollis (collared flycatcher): 101807935
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Entry
101807935 CDS
T02815
Symbol
SHH
Name
(RefSeq) sonic hedgehog
KO
K11988
sonic hedgehog
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
101807935 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
fab01002
]
101807935 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101807935 (SHH)
Peptidases and inhibitors [BR:
fab01002
]
Cysteine peptidases
Family C46: hedgehog family
101807935 (SHH)
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Morphogens
101807935 (SHH)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Ribosomal_S6e
Vint
Motif
Other DBs
NCBI-GeneID:
101807935
NCBI-ProteinID:
XP_016161689
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Position
2:complement(8473971..8489614)
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AA seq
341 aa
AA seq
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MDEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEKGGTKLVKDLRPGDRVLVADTEGRLLYSD
FLTFLDREDGSHKLFYAIETRQPRARLLLTAAHLVFVAPQHNQSQAGGRSSPTSNLQSSD
TARVMRLQSDQSSCSARRGTKPRSSLPNERQHGGTGLPGGC
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctcttggtgggcttcatctgcgctctttta
gtctcctctgggctgacttgtggaccaggcaggggcattggaaaaaggagacaccccaaa
aagctgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatcacaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacacgggagctgacagactg
atgactcagcgctgcaaggacaagctgaacgctctggcgatctcggtgatgaaccagtgg
cccggggtgaagctgcgggtaaccgagggctgggacgaggacgggcaccactccgaggag
tccctgcactacgagggccgcgccgtggacatcaccacctcggaccgggaccgcagcaag
tacggcatgctggcccgcctggccgtcgaggctggcttcgactgggtctactacgagtcc
aaggcgcacatccactgctccgtcaaagcagaaaactccgtggcggccaaatctggaggc
tgcttccccggctcggccacggtgcacctggagaaaggcgggaccaagctggtgaaggac
ctgaggcccggagacagggtgctggtggccgacaccgaaggccgtctgctctacagcgac
ttcctcaccttcctggaccgcgaggacggctcccacaagctcttctacgccatcgagacg
cggcagccgcgggcgcggctgctgctgacggccgcgcacctggtgttcgtggcgccgcag
cacaaccagtcgcaggcgggcgggcggtccagccccacttccaacctccaaagctcggac
acggccagggtgatgagacttcagagtgaccaaagcagctgcagcgccaggagaggaacc
aagccacgctccagcctacccaacgagaggcagcacgggggaactggactgcctggtggg
tgctga
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integrated database retrieval system