Ficedula albicollis (collared flycatcher): 101807980
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Entry
101807980 CDS
T02815
Symbol
PCDH1
Name
(RefSeq) protocadherin 1
KO
K16498
protocadherin delta 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
101807980 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
fab01009
]
101807980 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
fab04515
]
101807980 (PCDH1)
Protein phosphatases and associated proteins [BR:
fab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101807980 (PCDH1)
Cell adhesion molecules [BR:
fab04515
]
Cadherins
Protocadherins
101807980 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_4
K319L-like_PKD
TMEM154
Mid2
Syndecan
Motif
Other DBs
NCBI-GeneID:
101807980
NCBI-ProteinID:
XP_005053977
UniProt:
A0A803W7S4
LinkDB
All DBs
Position
13:16696705..16755342
Genome browser
AA seq
1078 aa
AA seq
DB search
MNPLASCLGLWLLCQLPALASGTRAIYKVQEEQPPNSLIGSLASDYGLPDMGHLYKLEVG
APYLRVDGKTGDIYTTETSIDRENLRECQHLLPGDPCYLEFEVSITNLNANSSPRLLEGQ
IEVLDINDNTPNFASPVLTLSIPENTNIGTLFPIPLAMDRDSGPNGVASYELMAGPEAQE
LFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQDGGNPPRASSALLRITILDMND
NAPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAEIDYSFHQASDMVRRLLRLDRA
TGLITVQGPIDREDIGTLKFSVMAKDKGANPKSARTQVVVTIKDMNDNAPSIEIRGIGLV
THQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVVAGDVPFQLRQASETGSDSKKK
YFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSSTNSLKVQVMDVNDNAPVFSQSFTEVAF
PENNEPDELVMEVSATDADSGSNAKLVYSLVTDPSSKGSFTIDPDSGEIRVKAVLDREQR
ERYEFLVVAEDKGSPSKQGTASVAINVMDRNDNDPKFMLSGYNFSVMENMPPLSPVGMVT
VIDADKGENARIQLSVEQDNGDFVIQNGTGTILSSISFDREQQSTYTFRLKAVDGGDPPR
SAYVGVTINVLDENDNAPFITSPSNATYKHILPHTSPGQQVSKVKAEDIDSGINAELIYS
ITGGNPFELFQISPQSGDITLEKEILRKHHGLHRLVVRVNDKGKPSRHGTALVHFYVNET
LANRTLLDTLVGHSLDTPLDIDIAGDPEYERSKQRSNILFGVIAGIVAVTLVIVLVVLVR
YCRQREAKSGYQAGKKETKDLYAPKQASKGGKSKGKVKKSKSPKPPKPTEDEEETGLQKS
LKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQD
LPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLPHRRVTFSAASQAQDLQDPSQH
SYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENESPERSRL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgctggcgtcctgcctgggcctgtggctcctctgccagctccctgccctggcc
tcggggacgcgtgcgatctacaaagtgcaggaggagcagccccccaacagcctcataggg
agcctggcctctgactacggcttgccggacatggggcacctctacaagctggaggtgggg
gccccgtacctccgtgtggatggcaagaccggggacatctacaccacggagacctccatc
gaccgggagaacctgcgggagtgccagcacctgctgcccggcgacccctgctacctggag
ttcgaggtgtccatcaccaacctgaacgccaacagcagcccgcgcctgctcgaggggcag
atcgaggtgctcgatatcaacgacaacacccccaacttcgcctcgcctgtgctcaccctc
tccatccctgagaacaccaacattgggacgctcttccccatccccctggccatggaccgg
gactcgggccccaacggcgttgcctcctacgagctgatggcgggtccggaggcgcaggag
ctctttgggctgcaggtggccgaggaccaggatgagaagcagccccagctgatcgtcatg
ggcaacctggaccgggagcagtgggactcctacgatctgaccatcaaggtgcaggatggg
gggaaccccccacgggccagcagtgccctgctccgcatcaccatcctggacatgaacgac
aacgcgcccaagttcgagaaggccctctacgaggcagagctctccgaaaacagccctgtg
gggcactctgtcctccaggtgaaagccaacgattcggaccagggcgccaacgccgagatc
gactactccttccaccaggcctcggacatggtgcggcggctgctgcgcctggaccgcgcc
acggggctcatcaccgtgcagggccccatcgaccgcgaggacatcggcaccctcaagttc
tccgtcatggccaaggacaagggcgccaaccccaagagcgcccgcacgcaggtggtggtc
accatcaaggacatgaacgacaacgcgccctccatagagatccgcggcatagggctggtc
acccaccaggatggcatggccaacatctcggaggacgtgccggtagagacagcagtggct
ctggtgcaggtgtccgaccgagacgagggtgaaaacgccgtggtgacctgcgtggtggcc
ggtgacgtcccattccagctgcgccaggccagtgagacggggagtgacagcaagaagaaa
tacttcctgcagaccaccacgccgctggactacgagtcggtgaaggagtacacgatagag
atcgtggccgtggactcgggcaacccgcccctctccagcaccaactccttgaaagtgcag
gtgatggacgtcaatgacaacgcccctgtcttcagccagagcttcactgaggtggccttc
cctgagaacaacgagcccgacgagctggtcatggaggtgagtgccactgacgctgacagc
ggctccaacgccaagctggtttattccctggtgacagacccctcctccaagggctccttc
accattgaccctgactccggggagatccgggtgaaggccgtgctggaccgagagcagcgg
gagcgctacgagtttttggtggtggcggaagacaagggcagccccagcaagcagggcacg
gcgtctgtggccatcaatgtcatggacaggaacgacaacgaccccaagttcatgctgagc
ggctacaacttctcggtgatggagaacatgccgcccctcagccccgtgggcatggtgacg
gtcatcgatgctgacaaaggagaaaatgcccggatccagctgtcggtggagcaagacaac
ggggattttgtcatccaaaatggcactggcaccatcctctccagcatctcttttgaccgg
gagcagcagagcacctacaccttccgactcaaggcggtggacggtggggatccccccagg
tctgcctatgtgggggtgaccatcaacgtcttggatgagaatgacaacgcccccttcatc
acttccccctccaacgccacctacaagcacatcctgccccacaccagccccggccagcag
gtgagcaaggtcaaggcagaggacatcgactcgggcatcaacgccgagctgatctacagc
atcacaggaggaaaccccttcgagctcttccagatctccccgcagagcggggacatcact
ctggagaaggagatcctgcgcaagcaccacggcctgcaccgcctggtggtgcgcgtcaac
gacaagggcaagccctcgcggcacggcacggccctggtgcacttctacgtcaacgagacg
ctggccaaccgcacgctgctggacacgctggtggggcacagcctggacaccccgctggac
atcgacatcgccggcgaccccgagtacgagcgcagcaagcagcgcagcaacatcctcttc
ggggtcatcgccggcatcgtggccgtcaccctggtcatcgtgctggtggtcctggtgcgc
tactgccggcagcgcgaggccaagagcggctaccaggcgggcaagaaggagaccaaggac
ctgtacgcgcccaagcaggccagcaagggcgggaagagcaagggcaaggtgaagaagagc
aagtctcccaagccgcccaagcccacggaggatgaggaggagacggggctgcagaaatcg
ctcaagttcaacctcatgaacgactccgtcagcgacagcccccggatccacctgcccctg
aactaccctccgggcagcccggacctgggccgccactaccgctccaactcgccgctgccc
tccatccagctgcagcctcagtcgccctccgcctccaagaagcaccaagtggtgcaggac
ctgccggccaccaacacctttgttggcaccggggacaacaactcgacgggctccgagcag
tactcggactacagctaccgcaccaacccccagaaatacaccaacaagcagttacctcat
cgccgggtgacgttctctgcagccagccaggctcaggacctgcaggacccctcccagcac
agctactacgacagcgggctggaggaatccgagacccccagcagcaaatcctcatcaggg
ccccgcatcgggcccctggccctgcccgaggaccactacgagcgcaccacgcccgatggc
agcatcggggagatggagcaccccgagaacgagtcccctgagcggagcaggctgtga
DBGET
integrated database retrieval system
