Ficedula albicollis (collared flycatcher): 101808061
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Entry
101808061 CDS
T02815
Symbol
CHD1, CHD1Z, chdz
Name
(RefSeq) chromodomain helicase DNA binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fab03021
]
101808061 (CHD1)
03036 Chromosome and associated proteins [BR:
fab03036
]
101808061 (CHD1)
Transcription machinery [BR:
fab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101808061 (CHD1)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
101808061 (CHD1)
SLIK complex
101808061 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
DUF7855_C
Motif
Other DBs
NCBI-GeneID:
101808061
NCBI-ProteinID:
XP_005062009
LinkDB
All DBs
Position
Unknown
AA seq
1810 aa
AA seq
DB search
MNGHSDEESVRNSSGESSRSDDDSGSASASGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDTSREKKQIQSKPPKVDGSEYWKSSPSILAVQRSAVLKKQQQQQKAASSDSVSE
EDSSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSDSESEEDREKSSCEESESDY
EPKNKVKSRKPPTRIKPKSGKKSAGPKKRQLDSSEDDDEEEEDDDYDKRGSRRQATVNIS
YKEAEETKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRVGRKGATGAATTIYAVEADG
DPNAGFEKSKEPAEVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKR
WLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSEC
SWEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLEL
RDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLST
LTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKS
FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM
PEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSAL
QKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQ
HLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE
LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI
GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFN
KEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKV
ANFSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQIS
FNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKF
GGPLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSAGQERAGGRLGKVKGPT
FRISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNL
LIGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKE
AQRLAGAGNSKRRKTRTKKNKVLKAAKLKEEIKSDSSPQPSEKSDEDDDENNKDEIVSMK
HPHKKFKAEKENEEKPEPDTGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKDIK
EKRENKVKESTQKEKEVKEEKVNEIKSENKEKTKRIPLLDTPVHITASSEPVPISEESEE
LDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNP
EQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISSNVNTHVIRNPD
VERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKSDSRKRPYSAFSNGKDHR
DWDHYKQESRYYSDSKHRKLDDYRSRDHRSSLEGSLKDSRVHSDHRSHSDHRIHSDHRSS
SEYSHHKSPRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKST
PEHTWSSRKT
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagtgtaagaaacagtagtggagagtcaagccgatca
gatgacgattctgggtcagcgtcagcttctggatctggttcaagctctggaagcagcagt
gatggaagcagcagccagtcaggcagcagtgactctgactctggttcagagtcaggctct
caatcagaatcagagtctgacacatccagagagaagaaacaaattcagtctaaaccaccg
aaagttgatggatctgagtattggaagtctagtccaagtatacttgctgtgcagagatca
gcagtgctcaagaagcagcaacagcaacagaaggcagcctcatcagacagtgtttcagaa
gaggactcctcaagtagtgaagattcagcagatgactcatctagtgaaaccaagaagaaa
aaacataaagatgaagactggcaaatgtcaggatcagggtcagtatcaggaactggttca
gattctgaatcggaggaagacagggagaaaagcagctgtgaagagagtgaatctgactat
gagccaaaaaacaaggtcaaaagccggaaacctccaaccagaattaagccaaaaagtggg
aaaaagagtgcaggaccaaaaaagaggcaacttgattcatcagaggatgatgatgaggag
gaggaggatgatgattatgataagaggggatctcgtcgccaggcaactgtcaacattagt
tacaaagaagctgaagaaaccaagacggattctgatgatttgctagaagtttgtggagaa
gatgttccacaacctgaagaagatgaatttgaaacaatagagaaatttatggatagtcga
gttggccgtaaaggagccacaggtgctgcaactacaatatatgcagttgaggcagatggt
gacccaaatgctgggtttgaaaaatcaaaggagccagcagaagtacagtatcttattaaa
tggaaaggttggtcacacatccataacacttgggaaactgaggaaacactgaagcaacaa
aatgttaaaggaatgaagaaactggacaattacaagaaaaaggatcaggaaacaaagcga
tggctgaaaaacgcttccccagaagatgtggaatactacaactgccagcaggagcttaca
gatgatctacataaacaataccagatagtggaaagaataattgctcattcaaatcagaaa
tcagctgctggttatccagactactactgtaagtggcagggtctgccttattctgaatgt
agctgggaagatggagctctcattgccaaaaagtttcaggcacgcattgatgagtacttc
agcagaaatcaatccaagaccactccctttaaagactgcaaggttctaaaacaaaggcca
cggtttgttgcactaaagaagcaaccatcttacattggaggacacgaaagtttagagtta
agagattatcagttaaatgggttgaattggcttgctcactcatggtgcaaagggaatagc
tgtattctggcagatgaaatgggtctgggtaaaacaatacaaactatttcttttctgaat
tatctgtttcacgagcaccaactgtatgggcctttcttgttggttgtgccgctttctacc
ttgacatcttggcaaagagagattcaaacctgggctcctcagatgaatgctgtagtttac
ttaggagacataactagtagaaatatgataagaactcatgaatggatgcatccacagacc
aagcgattgaagtttaacatactcttaacaacatatgaaattttgctaaaggataagtca
ttccttggtggtctcaattgggcattcataggagttgacgaagctcatcgtttgaaaaat
gacgactctcttctgtacaaaacgttaatagactttaagtctaaccatcgtcttcttatt
actggaacccctctgcaaaactctctcaaagagctttggtctttactgcacttcatcatg
ccagaaaagttttcctcatgggaagattttgaagaggagcatggcaaagggagagagtat
ggttatgcgagtcttcacaaagaacttgaaccatttctgctgagaagagttaaaaaagat
gtagaaaagtctttacctgctaaagttgagcaaattctgaggatggaaatgagcgcattg
cagaagcaatactacaaatggattttaaccaggaattataaagcccttagcaaaggttca
aaaggcagtacctcaggctttttgaacatcatgatggaactcaagaagtgttgcaaccat
tgctacctcattaaaccaccagatgataatgaattctataataaacaggaggccttacag
catttaatacgtagcagtgggaaactaatccttcttgacaagctactgattcgtctgcga
gaacgtggcaacagagtcctgattttctcacagatggtaaggatgctggacatcctggca
gagtatctgaaatatcgtcaattcccatttcagagacttgatggatcaataaaaggggaa
ttgaggaaacaagcactggatcattttaatgcagaaggatcagaggacttctgcttttta
ctgtctaccagagctggaggattaggtatcaacttggcatctgctgatactgtggttata
tttgattctgactggaatccacagaatgatctgcaagcacaggctagagcacatagaatt
ggacagaagaaacaggttaatatttatcggctagtcacaaaaggatcggtagaagaagat
attcttgaacgagccaagaaaaagatggtgttagatcatttagtaattcagagaatggac
actacagggaaaactgtgttacatacaggctctactccttcaagctcaacaccctttaat
aaggaggagttgtctgcaattttgaagtttggtgctgaggaactttttaaagaaccggaa
ggggaagagcaggagcctcaagagatggatatagatgaaatactgaagagggctgaaact
cgggaaaatgagccaggtccattaactgtaggagatgagttgctttcgcagttcaaggtg
gccaacttctccaatatggatgaagatgatattgaattggaaccagaaagaaattcaaga
aactgggaagaaatcattccagaggtccagaggcgaagaatagaagaggaggaaagacaa
aaagaacttgaagaaatatacatgcttccaaggatgagaaactgtgcaaaacagattagc
ttcaatggcagtgaggggaggcgcagtaggagtagaagatactctggatctgatagtgac
tccatctcagaaagaaaaaggccaaaaaaacgtggaagaccacgaactattcctcgagaa
aatattaaaggatttagtgatgcagagataaggcggtttatcaagagttacaagaaattt
gggggccctctggagaggttagatgctgtagctagagatgctgagctggttgataaatca
gagacagatctcagacgtttgggagagcttgtacataatgggtgcattaaagccttaaag
gacaattcagctggacaagaaagagcaggaggtagacttgggaaggttaaaggcccaaca
ttccgaatctcaggagtgcaagtaaatgcaaagttagtcatctctcacgaagaagagttg
gcaccattgcacaaatccattccttcagatccagaagaaagaaaaagatatgtcatccca
tgccatactaaggctgctcattttgatatagattggggtaaggaagatgattccaatttg
ttaataggcatctatgaatatggttatggcagctgggaaatgataaaaatggatcctgat
ctcagtttgacacagaagattttgcctgatgacccagataagaaaccccaggcaaagcag
ttacagacccgtgcagactacctcattaaattactgaataaagaccttgcgaggaaggaa
gcacaaaggcttgctggagctggcaattcaaagaggaggaaaacaagaactaagaagaat
aaggtgctaaaggctgcaaaattaaaagaagaaataaaaagtgattcttcaccacagccc
tcagaaaaatcagatgaagatgatgatgagaataacaaggatgagattgtttcaatgaaa
catccgcataaaaaatttaaagcagaaaaagaaaatgaagaaaagcctgagccagatact
ggtataaagaaggaagcggaagaaaaaagagagacaaaagaaaaggaaaataagagggat
ttgaaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaggatattaaa
gaaaagagagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagag
aaggtaaatgaaataaaatcagaaaataaggaaaaaactaaaagaattccattgctggat
actccagttcatattactgcatctagtgaaccagttcctatatcagaagaatctgaagaa
ctagatcagaaaacttttagtgtgtgcaaggaaagaatgagacctgtcaaggcagcattg
aaacagctggatcgaccagagaagggcctttctgaaagagaacagctggaacatactaga
cagtgtcttatcaaaattggggatcatattactgaatgtctaaaggagtacacaaatcct
gaacaaattaaacagtggagaaaaaatttgtggatttttgtctctaagtttacagaattt
gatgccagaaagctgcacaaattgtataagcatgcaatcaaaaaacgtcaagaatctcag
caacacaacgatcagaatattagcagcaatgtgaatacacatgtaattagaaatccagat
gtggaaagactgaaggagaatacaaaccatgatgacagtagcagggacagctactcctct
gatagacatctgtcacaataccatgatcatcataaagacaggcatcagggagatgcttac
aagaaaagtgactccaggaaaaggccctattcagccttcagcaatggaaaagatcacaga
gactgggatcactacaaacaagagagcagatattacagtgatagtaaacatagaaagtta
gatgactacaggagcagagaccacaggtcaagcctggaagggagtctgaaagacagccgg
gttcattcggatcaccgttcccactcagaccacaggatacattcggatcaccgttcctct
tccgagtacagccatcacaaatctcccagagattacaggtaccactcagactggcaaatg
gaccacagagcttcaggtagtggcccaaggtcaccactggatcagaggtctccttatgga
tcaagatctcccctaggtcacagatctccatttgaacattcatcagatcacaaaagtaca
cctgaacatacatggagtagccggaaaacataa
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integrated database retrieval system
