Ficedula albicollis (collared flycatcher): 101808079
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Entry
101808079 CDS
T02815
Symbol
DHX15
Name
(RefSeq) DEAH-box helicase 15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101808079 (DHX15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fab03041
]
101808079 (DHX15)
03009 Ribosome biogenesis [BR:
fab03009
]
101808079 (DHX15)
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101808079 (DHX15)
Spliceosome [BR:
fab03041
]
Complex A
U2 snRNP components
U2 related factors
101808079 (DHX15)
Complex B
101808079 (DHX15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
101808079 (DHX15)
Ribosome biogenesis [BR:
fab03009
]
Eukaryotic type
90S particles
Helicases
101808079 (DHX15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
Flavi_DEAD
AAA_25
AAA_29
Atrophin-1
TMEM132
Motif
Other DBs
NCBI-GeneID:
101808079
NCBI-ProteinID:
XP_016153166
LinkDB
All DBs
Position
4:53537072..53585183
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AA seq
853 aa
AA seq
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MGRNLVKGVENRISEKGWGSWGGSAGSRGGSGEPHGSSRLLTGDAARRDRLCSAVPAAGQ
PEEICSSRERQIQIRYRKKSFSVRALRQWIPPLHLNIQVSHFLLCLLTHFRKDRDRDRDR
DDRSKDRDRDRDRDRDRDRERDKEKDLRPTSNSTYYAAAGLPAIKPAMIPHSINPFTNLP
HTPRYYDILKKRLQLPVWEYKERFTDILVRHQSFVLVGETGSGKTTQIPQWCVDYMRSLP
GPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLL
REAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQI
YFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEI
DEACKRIKREIDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTN
IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCF
RLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALEL
LNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVR
PTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQ
QLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLH
PSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDR
IIAKLQSKEYSQY
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgggcagaaaccttgtgaaaggtgtagagaacaggatttctgagaagggctggggtagc
tggggcggctctgcggggagcagaggaggctcgggggagcctcacggctcctcacggctc
ctgacaggagatgcggcccggcgggaccggctctgttctgctgtgcctgcagcgggacag
ccagaggaaatctgctctagccgagagaggcagattcagatcagatacagaaaaaaatct
ttcagtgtcagggcgctcaggcagtggattcctcctctgcatttaaatattcaagtgtct
cattttctactgtgtctcttaactcattttaggaaagatcgggaccgggacagggaccga
gatgaccgttcgaaagatcgtgacagggatcgtgacagagatagagatcgtgacagagaa
agggacaaggagaaagatctgcgacctacatctaactccacatattatgcggctgctggg
ttaccagctatcaaaccagcaatgattccacacagtattaaccctttcacaaatctacca
cataccccacgatattatgatatcctgaaaaaaaggctgcagcttcctgtctgggaatat
aaagaaagatttacagatattttggttagacatcagtcatttgtgctggttggagagact
gggtctggtaaaacaacgcagatcccccagtggtgtgttgactacatgcgctcgttgcct
ggcccaaagaggggagtggcgtgtacccagccgcggcgagtggcggccatgagcgtggcg
cagcgcgtggccgatgagatggatgtcatgctgggccaggaggtcggctactccattcgc
tttgaagattgcagtagcgcaaaaaccattctgaagtatatgactgatggtatgctactt
cgtgaagcaatgaatgatcctttgctggagcgctacggtgttataattcttgacgaggcc
catgagagaacactggctacggatatcttgatgggagttttgaaggaagttgtaagacag
aggtctgatttgaaggttatagttatgagtgctactttagatgctggcaagtttcagatc
tattttgataactgtcctcttctaactatcccgggtcgcacccatcctgtggagatattc
tatactccagaacccgaaagggactaccttgaggctgccattcgaacagtgatacaaatt
cacatgtgtgaagaagaagaaggagatctcttactctttcttactggacaagaggagatt
gatgaagcctgcaagaggataaaacgtgaaattgatgacttaggtcctgaagttggtgac
ataaaaatcattccattgtattccacccttcctccacagcagcagcaaaggatatttgaa
cctcccccaccaaaaaaacaaaatggagcaataggaagaaaggttgtggtgtccactaac
attgcggagacatcattgacaatagatggtgtagtgtttgtgattgatcctggctttgca
aaacagaaggtgtacaatcctcgtatcagagtggagtctctgttggtgactgcgatcagc
aaagcgtctgcccagcagcgagctggccgtgctggtcgtactcggccaggcaagtgcttc
aggctttatacagagaaagcctacaaaactgaaatgcaggacaacacataccctgaaatt
ttgagatctaacttaggatctgtagtattacagctcaagaagcttggtatagatgatttg
gtgcactttgattttatggatcctccagctcctgaaactctgatgagagccttagagctt
ttgaattatctggctgctttaaatgatgatggagacttgactgagttgggatcgatgatg
gctgaatttccattggatccacagctggctaaaatggttattgcaagctgtgactacaac
tgttctaatgaggtcctatctattactgccatgttgtcagtcccacagtgttttgttcgc
cccacggaagcaaagaaagcagcagatgaagccaagatgaggtttgcccacatagatgga
gatcatttgacgttgctgaatgtctaccatgctttcaagcaaaatcatgagtcggttcag
tggtgttatgacaacttcattaactacaggtccctgatgtctgcagacaatgtacgccaa
cagctgtcacgaatcatggatagatttaatttgcctcgtagaagcacagattttaccagc
cgagactattacatcaacataagaaaggcattagttactggatatttcatgcaggtggca
catttggagcgaacagggcattacttaacagtgaaagataaccaggtggtgcagttgcat
ccttccactgttcttgatcacaaaccagaatgggtgctatataatgagtttgtccttaca
acgaagaattacatccggacatgtacagacatcaagccagaatggctggtgaaaattgcc
cctcaatattatgacatgagcaattttccacagtgcgaagcaaagagacagttggatcgc
atcattgccaaacttcagtccaaggaatactcacagtactga
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