Ficedula albicollis (collared flycatcher): 101808239
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Entry
101808239 CDS
T02815
Symbol
SMARCD2
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101808239 (SMARCD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fab03021
]
101808239 (SMARCD2)
03036 Chromosome and associated proteins [BR:
fab03036
]
101808239 (SMARCD2)
Transcription machinery [BR:
fab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101808239 (SMARCD2)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101808239 (SMARCD2)
PBAF complex
101808239 (SMARCD2)
GBAF(ncBAF) complex
101808239 (SMARCD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Collagen
Motif
Other DBs
NCBI-GeneID:
101808239
NCBI-ProteinID:
XP_005059616
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All DBs
Position
27:865072..888400
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AA seq
720 aa
AA seq
DB search
MAGINGTTGINGMAGTNGIAGTNGTAGTNGIAGINGTPKTPGTAGTNRTPGTIATPETLA
TSAPACARDPQDSRAPCSARPRLRDPPAPHSGPSVPVPGEGSEFLLQPSKRQKTVLGAEL
AECEPLAARCCFPRVNRLPDAASRLPDASSPTAGTAAAVGSRGAIQAPELVLSGLSLSLG
KKRIQRYPWEGEGREPLPPPSLAPFPAVGGGATGGGGPVSPGAVSPRVVSPGVVAPRVVS
PRVVSPGALSPGPLARWLARRSVTPVPCPVPQQRPGMPPGGRMPMAGLQVGPPGAPPFGA
ASPLRPGLPQAMMDPFRKRLLTPQAQPAMAAPRRGVKRRKMADKVLPQRIRELVPESQAY
MDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFTPAKEEGEGGERVASWE
LRVEGKLLEDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRP
GDVNVKCTLLLMLDHQPPQYRLDPRLARLLGVHTQTRASIMQALWLYIKHNKLQDSHEKE
FINCNRYFRQIFNCVRMRFSEIPMKLAGLLQHPDPIIINHTISVDPNDQKKTACYDIDVE
VDDPLKAQMSNFLASTTNQQEIASLDAKIHETIESINQLKTQRDFMLSFSNNPQDFIQEW
IKSQRRDLKIITDVIGNPEEERRAEFYQQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggccgggattaacgggacaaccgggattaacgggatggccgggactaacgggatagcc
gggactaacgggacagccgggactaacgggatagccgggattaacgggacaccaaagacg
cccgggacagccgggaccaaccggacccctggaaccatcgcgacccccgagacactcgcg
acctccgcacccgcgtgtgcccgagacccccaagactcccgcgccccctgctccgcacgc
ccgcggctccgtgacccccccgctccgcactccggcccgagcgtgcccgtccccggagaa
ggaagtgagttcctcctgcagccttcaaaacgccagaaaacggtgttgggagccgagctg
gccgagtgtgagccgctggctgccagatgctgcttcccccgggtaaacaggctgccagat
gctgcttcccggctgccagatgcttcttcccccacggccgggacggcggcggctgtgggg
agcaggggagcgatccaggcccccgagctggtgttgagtggcctctccctgagcctggga
aagaagaggatccagaggtatccctgggagggggaaggacgggagcccctgcctcctcca
tccctcgctcccttcccggcggtgggaggaggtgccaccgggggtggtggccccgtgtca
ccgggggcggtgtccccgagggtggtgtcaccgggggtggtggccccgagggtggtgtca
ccgagggtggtgtccccgggggcgctgtccccggggccgctggctcgctggctggcgcgg
cgctctgtaacccccgtgccctgtcccgttccgcagcagcggcccgggatgccccccggc
ggcaggatgcccatggcggggctgcaggtgggacccccgggcgcgcccccgttcggagcc
gcctccccgctgcggcccggcctgccccaggccatgatggaccccttcaggaagcgcctg
ctgaccccccaggcacagccggccatggccgccccccggagaggggtgaagaggaggaag
atggctgataaggtgttgccacagaggatccgggagctggtcccagagtcccaggcctac
atggacctgctggccttcgagcgcaagctggaccagaccattgccaggaagaggatggag
atccaggaggccatcaagaaacccctgacgcaaaagaggaagctcaggatttacatctcc
aacaccttcaccccggccaaggaggagggagaggggggagagcgtgtggcctcctgggag
ctccgtgtggaggggaaactgctggaggatcccagcaagcagaagaggaagttctcctcc
ttcttcaagagcctggtgatcgagctggacaaggagctgtacgggccagacaatcacctg
gtggagtggcaccggatgcccaccacccaggagaccgacggcttccaggtgaagcgtccc
ggggatgtcaatgtcaagtgcaccctgctgctcatgctggaccaccagcccccccagtac
aggctggacccgcggctggcccggctgctgggggtgcacacccagaccagggccagcatc
atgcaggccctgtggctctacatcaaacacaacaaactgcaggacagccacgagaaggag
ttcatcaactgcaaccgctacttccgccagatcttcaactgtgtgcgcatgcgcttctct
gagatccccatgaagctggcggggctcctgcagcacccagaccccatcatcatcaaccac
accatcagcgtggaccccaatgaccagaagaagacagcctgctacgacatcgacgtggag
gtggacgatcccctcaaagcccagatgagcaatttcctggcctccaccaccaaccagcag
gaaatcgcctccctggatgccaagatccacgagaccatcgagtccatcaaccagctgaag
acacagagggacttcatgctgagcttcagcaacaacccccaggatttcatccaggaatgg
atcaaatcccagaggagggacctcaagatcatcacggacgtgatcgggaaccccgaggag
gagcggcgcgccgagttctaccagcagccctgggcgcaggaggccgtgggcagacacatc
tttgccaaggtccagcagcgccggcaggaactggaacaagtgctcgggatccgcctcacc
taa
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