Ficedula albicollis (collared flycatcher): 101808536
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Entry
101808536 CDS
T02815
Symbol
EXOSC1
Name
(RefSeq) exosome component 1
KO
K07573
exosome complex component CSL4
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101808536 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101808536 (EXOSC1)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
101808536 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
101808536 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
101808536
NCBI-ProteinID:
XP_005048549
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All DBs
Position
6:22589713..22591951
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AA seq
212 aa
AA seq
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MPRPGPAGSGRCARSRMPRQPLSPCVAGERLCSTEEATAGSGTYTRHGFIFSSLAGCLER
KNEDNELPVVSVVRDSESQLLPNVGAVVTCKVCSINSRFAKVHILYVGSTPLKSTFRGTI
RREDIRATEKDKVEVYKSFRPSDIVLAKVISLGDAQSNYLLSTAENELGVVVARSEAGVQ
MVPISWCEMQCPRTHTKEFRKVARVQPQFLQT
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgccccgccctgggccggctggaagcgggcgctgtgcccggagccggatgccccggcag
cccctgagtccctgtgttgcaggtgagcgcttgtgcagcacggaggaggccacggctggt
agtgggacctacactcgtcatggcttcatcttctcctcgctggctggctgcctggagagg
aaaaatgaggacaacgagctgcccgtggtgtcggtggtgagagacagcgagtcccagctc
ctgcccaacgtgggggctgtggtcacctgcaaggtctgcagtattaactctcgctttgcc
aaggtgcacatcctgtacgttggctccacgccgctgaaatccaccttccgaggcaccata
cggagagaagatatccgagccacggagaaggataaggtagaagtgtacaagagcttccgc
cccagtgacattgtcctggccaaagtgatctccctgggggatgcacagtccaactacctg
ctgagcacagcagagaatgagctgggcgtggtggtggcacgcagtgaggcaggagtgcag
atggtgcccatcagctggtgtgagatgcagtgcccacggacacacaccaaggagttccgt
aaggtggcccgagtgcagccccagttcctgcagacgtaa
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