Ficedula albicollis (collared flycatcher): 101809122
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Entry
101809122 CDS
T02815
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101809122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101809122
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101809122
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
101809122
NCBI-ProteinID:
XP_005046022
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All DBs
Position
4A:complement(19149657..19176899)
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AA seq
535 aa
AA seq
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MKDDTTGKQEDGPISGHTESAHPLQDAPQESRPVNNEDREMSQHALPSGEDDEDDSDSDS
DDDDVKVTIGNIKTGAPSYMGTPMNLNLKTGRGYGASASAKLQPKGIDLDAAGNINGLPV
IEVDLDSFEDKPWRKPGADLSDYFNYGFNEETWKAYCEKQRRLQLGLDPAPPISTENKIT
VQQGRTGNAEKEVENNIIKTEFKTDFLALVGGRMKAGPPPNRKLGGTIDVIGGQAGTIRR
VEGRRRDKHASEENPIQVLGDHGSKPQPPQQPQQPSQPQQPPQQQPFAPPAGPPPPPLAG
PPPPHFLHPPPPVTSVPPPLHPPGLPPPGPIPGLFPPPLAPPPALLIPTLDGQPASYNNR
QPPPFGYNSADSGFISYPPISTSHTPWVSTVDKGTSSSSSGHWEYSGSRRERERGRDRDR
DRERERDRDRTPTTSEYNNDDERYRYYSRERSYDFERDYRRSRDRSREREERHRERRHRD
KDDSSKHKSSRRKQHESEEGESHRRHKHKKNKRSKEEKEASEDGAQEGEEQDTKE
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatgacaccactggtaagcaagaagatggaccaatttctggacacacagaatct
gctcaccctctgcaggatgccccccaggagagcaggcctgtcaacaacgaggacagggag
atgtcccagcacgcccttcccagtggtgaggatgatgaggatgacagtgacagtgacagc
gatgacgacgacgtgaaggtcaccattggcaacatcaagacaggagcaccatcctacatg
ggaactcctatgaatctaaacttaaaaacgggtagaggctatggagcatcagcttcagcc
aagctgcagcccaaaggtattgacttggatgctgcagggaatataaatggattgcctgtg
atagaagtggatttggattcatttgaagacaaaccgtggaggaagccaggtgctgatctt
tctgattactttaattatggattcaatgaagaaacgtggaaagcttattgtgaaaagcag
cggcggcttcagctggggctggaccctgctcctcccatcagcactgagaacaagatcacg
gtccagcagggaagaacaggcaatgctgaaaaagaagtggaaaacaacatcatcaaaaca
gagttcaaaacagactttttggctctggtgggaggacgaatgaaggctgggcctcctccc
aacaggaagctgggtgggaccattgatgtgatcgggggccaggcaggcaccatccgcagg
gtggaggggagacgccgggataaacatgcctcggaggagaaccccatccaggtgctggga
gaccatggcagcaagccccagccccctcagcagccccagcagccctcccagccccagcag
cctcctcagcagcagcccttcgctccgcccgccgggccgccgcctcccccgctcgccggg
cctcctcctcctcacttcctgcaccctcctcctccagtgacttctgttcctcctcccctg
caccctccaggcctgccacctccaggtccaatcccagggttgttcccaccccctctggca
ccaccaccagctctcctcatcccaaccttggatgggcagccagccagctacaacaacagg
cagccacctccctttggctacaactctgcagattcaggtttcatcagctacccccccatc
tccacgtcgcacacgccctgggtgagcacggtggacaagggcacgagcagttccagcagc
ggccactgggagtactcgggctccaggcgggagcgggagcggggcagggaccgggaccgg
gacagggagcgcgagcgggaccgcgaccgcacccccaccaccagcgagtacaacaatgac
gacgagcgctaccgctactacagccgcgagcgcagctacgacttcgagcgcgattatcgg
cgcagccgcgaccgcagccgcgagcgcgaggagcggcaccgcgagcggcgccaccgcgac
aaggacgacagcagcaaacacaaatcctcccgcaggaagcagcacgagagcgaggagggc
gagagccaccggcgccacaagcacaaaaagaacaagcgcagcaaggaggagaaggaggcc
agcgaggacggcgcccaggagggcgaggagcaggacaccaaggagtga
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