Ficedula albicollis (collared flycatcher): 101809226
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Entry
101809226 CDS
T02815
Symbol
LSM5
Name
(RefSeq) LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
fab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101809226 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
101809226 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101809226 (LSM5)
03041 Spliceosome [BR:
fab03041
]
101809226 (LSM5)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101809226 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
101809226 (LSM5)
Spliceosome [BR:
fab03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101809226 (LSM5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
101809226
NCBI-ProteinID:
XP_005061839
LinkDB
All DBs
Position
Unknown
AA seq
62 aa
AA seq
DB search
MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGP
EV
NT seq
189 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcgacaaagaaattgttgggacacttctaggatttgatgactttgtcaatatg
gtgctggaagatgttacagaatttgagatcacacctgagggcagaagaatcacaaagctg
gaccagattctgctaaatggaaataacataactatgctggttcctggaggagaaggacct
gaagtatga
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