Ficedula albicollis (collared flycatcher): 101809607
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Entry
101809607 CDS
T02815
Symbol
NDC1
Name
(RefSeq) NDC1 transmembrane nucleoporin
KO
K14315
nucleoporin NDC1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101809607 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101809607 (NDC1)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101809607 (NDC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
GP41
Motif
Other DBs
NCBI-GeneID:
101809607
NCBI-ProteinID:
XP_016155527
LinkDB
All DBs
Position
8:complement(26797496..26812849)
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AA seq
749 aa
AA seq
DB search
MCLIVSSGSGVVSPAPLTLRTPQAPGGRVAARPPRSRSSHAVSPQVPGWFRGGSGVVSPA
PLTLRTPQAPGGRVAARPPRSRSSHAVSPQVLGWRVAAAVTWSVLLLPFCTAAFVVLSGL
DPFHPVRWISNSFNDLYTSYVIFCIFLMSVVIIVISIFNAEFYAVVPSIPCSRLALIGKI
IQPQQVIHSFVHAIMGMLVAWCATIMTKGRFQFLAVSCTPSESLEDAVSQMCLNEYHLFF
LLFGVVLGYSYSIFYLVNNMNYLSFPIIQQYKYLRFRRSLPLLIKHSCVESLCFVKSFFV
TYYFFGYIPKLWICTTMDLHIDSKLHPLDTLSGLLDLSLFYHTWLTGVFILMTWYIAWLL
FKIYATESHYFPIQPTFAQETDQCLPKILNSNPPLLIKFLALQDLMLLSQYCPFRRQEVF
SLSQPGGHPHNWTAISRECLRLLSDLTERLIAQQEAAAAANGRAKPPVGELKVPPQTPGA
VGIEDMSLQSQRSNMILRASMSPLVKPSLMPVKTSPGSDVGSPFSCPALSYKIGVVDVKS
PWHGPVQSPPSMRRGPKLWTSVSDQQMNGSHHESFPLLSAARAGSEAVQPRLIYTWLQNK
QEQIKTFLSKRALIMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDQFGVVQ
TTLPAILNTLLTLQEVVDRHFKLPHVSSKPPQISGSLVDTSYKTLRFALRASLKTALYRI
TTVFGEHLNAVQVSTEHKKRLQQFLDYKE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgtgccttattgtgtcctctggttccggggtggtgagccctgctcccctcaccctgcgc
acccctcaggcgccgggcgggcgggtggcggcgcgtcccccccgctcccgttcctctcac
gctgtctcccctcaggttccggggtggttccggggtggttccggggtggtgagccctgct
cccctcaccctgcgcacccctcaggcgccgggcgggcgggtggcggcgcgtcccccccgc
tcccgttcctctcacgctgtctcccctcaggttctgggctggcgagtggccgccgccgtg
acctggtccgtgctgctgctgccgttctgcaccgcggccttcgtcgtcctcagcggcctc
gacccgttccacccggtgcgctggatctcgaattccttcaacgatttgtatacttcctat
gtcatcttttgtatcttcctgatgtctgtggtgataatagtaataagcatcttcaacgct
gaattttatgcagtagtgccatccataccatgctctcgattagcactgataggaaaaatt
attcagcctcagcaagtcatccattcctttgttcatgctatcatgggaatgctggttgct
tggtgtgctactatcatgacaaaagggaggttccagtttcttgctgtgtcctgcacacct
tcagaaagcctagaagatgctgtttctcagatgtgcctaaatgagtatcacctcttcttt
ctactttttggagtcgtcttgggatacagttacagcattttctatcttgttaacaacatg
aattacttgtcatttccaatcatacagcaatacaaatatttacgtttcagaagatctttg
cctctcctgataaaacacagttgtgtggaatcactctgttttgttaaaagcttctttgtc
acatattacttttttggttatattccaaagctatggatttgcaccacgatggatcttcat
atagacagtaaattacatcctcttgacactctgagtggcttattggatctctccttgttt
taccatacctggctgactggtgtatttattctgatgacctggtacattgcttggctgctc
ttcaaaatctatgccacagagagtcattattttcccattcaaccaacatttgctcaggag
acagaccagtgcctgcctaaaatcttaaacagcaatcctcccctccttataaagttttta
gccctacaagacttgatgttgctttcccagtattgtccttttcgacgacaggaggtcttt
agccttagtcagccaggtgggcacccacacaactggactgccatatcccgggagtgtttg
cgtctcctcagtgacctgactgagaggctgattgcacagcaggaagcagcagcagcagca
aatgggagagcaaagccaccagtgggagagctgaaagtacctccacagactccaggagct
gttgggatagaagacatgtcattgcagtcacagaggtccaacatgattctcagagcctcc
atgtctccacttgttaagccatccctgatgcctgtaaagacgtctcctggctctgatgtt
ggttcacctttcagctgtcctgctttaagttacaagataggagttgtggatgtgaagtct
ccttggcatggaccagtccaaagtccccccagcatgaggaggggaccaaagctgtggacg
tcggtttcagatcagcagatgaatggttcccaccatgaatccttcccattgctctctgct
gcgagagctggcagcgaggcagtgcagccaagacttatttacacgtggcttcagaacaag
caagaacagataaaaaccttcttgtccaaacgggcgctgataatgtatttcttcagcaag
cacccagaagcctccatccaggcagtcttttctgatgcccaaatgcacatctgggctttg
gaaggtctgtctcacttggtagcagcctcctttactgaagaccagtttggagttgtccaa
actacactgccagctatcctgaacacattactgactcttcaggaggtggtagacagacat
ttcaaactgccacatgtttctagcaaacctccccagatttcagggagtttggtggacaca
tcctacaaaacactacggtttgcacttagagcatctctgaaaacagccctgtaccggata
actactgtctttggagagcacttgaatgctgtacaagtgtctacagaacataaaaaaaga
cttcagcaattcctggactacaaagaatga
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