Ficedula albicollis (collared flycatcher): 101809923
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Entry
101809923 CDS
T02815
Symbol
VPS35
Name
(RefSeq) VPS35, retromer complex component
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
101809923 (VPS35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fab04131
]
101809923 (VPS35)
Membrane trafficking [BR:
fab04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
101809923 (VPS35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
KH_GLD-3_1st
Imm5
Motif
Other DBs
NCBI-GeneID:
101809923
NCBI-ProteinID:
XP_016156658
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Position
11:14319884..14336630
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AA seq
767 aa
AA seq
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MKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGR
KVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFL
RNYLLQCTRNILPDEGEQADEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKR
ERERQELRILVGTNLVRLSQLEGVNVERYKQIVLPGILEQVVNCRDALAQEYLMECIIQV
FPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPADIKLFDIFS
QQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIA
TSSAVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSNVLDYNT
EIVSQEQVDAIMNLVSTLIQDQPDQPAEDPDPEDFADEQSLVGRFIHLLRSDDPDQQYLI
LNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTIS
ALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAIT
LIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQCRAVSTCAHLFWSGRNTDKNGEE
LHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENEAVTIQVLNQLIQK
IREDLPNLESTEETEQINKHFHNTLEHLRLRRESPESEGPIYEGLVL
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgaagagatgcttggacaagaacaagctcatggatgctctgaaacatgcttccaacatg
cttggggagctgcgcacttctatgttatctccaaagagctattatgagctctacatggca
atttctgatgaactacactacttggaagtctacctgacagatgaatttgccaaaggcagg
aaagtggcagacctttatgagctagtacagtatgctggaaatatcattccaagactgtat
ctgctgataacagtaggtgttgtctatgtcaagtcatttccacagtccaggaaagatatt
ttgaaagacctggtggagatgtgccgtggagtgcagcatcctcttagaggcctctttctt
agaaactatctcctgcagtgtaccagaaatatcttaccagatgaaggcgagcaagcagat
gaagaaaccactggagacatcagtgactcaatggattttgtgctgctgaactttgctgag
atgaacaagctgtgggtgcggatgcagcaccagggccacagtcgggacagagagaagagg
gagcgggagaggcaggagctgaggatcctcgtggggaccaacctggttcgcctcagtcag
ctggagggggttaatgtggagcgatacaagcagattgttctgcctggaatactggagcaa
gttgtgaactgtagagatgctttagctcaggagtacctcatggagtgcatcatacaggtt
ttcccagatgaatttcacctccaaaccctgaacccatttctcagagcgtgtgctgagctg
catcaaaatgtgaatgtgaaaaatataattattgctttaattgacaggttagctttattt
gcacatcgtgaggatggacctggtattccagcagatatcaaactttttgatatcttttca
cagcaggttgctactgttatacagtctcggcaggacatgccctcagaggatgtggtgtct
ttgcaagtttctctcattaacctggctatgaaatgctacccagaccgtgtggactatgtt
gacaaggtcttggagactactgtggaaatattcaacaaacttaatctggaacatattgca
acaagcagtgctgtttcaaaggagctgactagacttttgaaaatcccagttgatacttac
aacaatatcctgacagttctgaaactaaaacattttcacccactctttgaatactttgat
tacgagtccaggaagagcatgagttgttacgtgctcagcaatgtattggattataacaca
gaaattgtgtcccaagaacaggttgatgctatcatgaatttggtatccacgttgatccag
gatcaaccagatcagcctgctgaagatcctgaccctgaggactttgctgatgagcaaagt
cttgtgggaagatttattcatctgctgcgttctgatgaccctgaccaacagtacctgatc
ctcaacactgcccggaagcactttggggcaggggggaaccagcgcattcgtttcacgctg
ccacccttggtttttgctgcctaccagctcgcttttcgctacaaagagaactccaaagtg
gatgacaaatgggagaagaagtgccagaagatcttctcatttgctcatcagaccatcagt
gctctgatcaaagcagagctggcagagctgcctctgcgactcttcctgcagggagcactg
gctgcaggagagattggctttgagaatcacgaaactgtggcctatgagttcatgtcccag
gccttctctctatatgaagatgaaatcagtgactcaaaagcacagctggctgcaatcacc
ttgataattgggacatttgagaggatgaagtgcttcagtgaggagaaccacgagcctttg
aggactcagtgtgcactggcagcctccaaactcctgaagaagccagaccagtgccgagct
gtgagcacttgtgcccatcttttctggtctggccgaaacactgacaagaatggagaggag
cttcatggaggaaaaagagtgatggaatgcctgaagaaggctctgaagatagcaaatcag
tgcatggacccttctctgcaagtccagcttttcatagaaattctgaatagatatatctat
ttttatgaaaaggaaaatgaggcggtgacaattcaggttttgaatcagcttatacagaag
atcagagaagatctcccaaaccttgagtctactgaagaaacagaacaaattaacaaacac
tttcacaacacactggagcacttgcgtctgaggagggaatcaccagaatctgaggggcca
atttatgaaggtcttgttctttag
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