Ficedula albicollis (collared flycatcher): 101809945
Help
Entry
101809945 CDS
T02815
Symbol
UPF1
Name
(RefSeq) UPF1, RNA helicase and ATPase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03013
Nucleocytoplasmic transport
fab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101809945 (UPF1)
03015 mRNA surveillance pathway
101809945 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101809945 (UPF1)
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101809945 (UPF1)
5.6.2.5 RNA 5'-3' helicase
101809945 (UPF1)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101809945 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101809945 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101809945
NCBI-ProteinID:
XP_016159967
LinkDB
All DBs
Position
28:complement(4322378..4356383)
Genome browser
AA seq
1064 aa
AA seq
DB search
SWQHFPVEVFGVDFLAVHPNLQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYY
TKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDG
PLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQ
DRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLL
RYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFV
WKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHS
QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI
HQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKR
YRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGA
KQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSN
IFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVE
KITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK
DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKE
QKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGR
PSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGK
AGRGGRQKNRFGIPGSSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQ
PELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
tcctggcagcactttcctgtggaggtttttggggttgattttttggctgtgcaccccaat
ttgcaggtgaatggtcctgatgggatcctgcagaatggagctgtggatgagaacgtggcc
aagaccagccagctcctggcagagctcaactttgaggaggatgaggaggacacttattac
accaaggacctgcctgtgcacgcctgcagttactgtgggatccatgaccctgcctgtgtg
gtttactgcaacaccagcaagaagtggttctgcaacgggcgtgggaacacctctggcagc
cacattgtgaatcacctggtgagagccaagtgcaaggaggtgaccctgcacaaggacggg
cccctgggtgagactgtcctggagtgctacaactgcggctgccgcaacgtcttcctgctg
ggcttcatccctgccaaggctgactccgtggtggtgctgctgtgcaggcagccatgtgcc
agccagagcagcttgaaggacatcaactgggacagttcccagtggcagcccctgatccag
gaccgctgcttcctctcgtggctggtgaagattccctcggagcaggagcagctccgcgcc
cgccagatcacagcccagcagatcaacaagctggaggagctctggaaggaaaatccatct
gcaaccctcgaggacttggaaaaacctggtgttgatgaggaaccccagcatgtcctgctt
agatatgaagatgcttatcaataccaaaatatctttggtcctctggtcaagcttgaggca
gattatgacaagaaactcaaagaatctcagacccaagataacatcacagtcaggtgggac
ctgggcttgaacaagaagagaattgcttatttcactttgccaaagactgattcagacatg
cgcctcatgcagggagatgagatctgcctgaggtacaagggagacctggcccctctctgg
aaaggaattgggcacgtgatcaaagttcctgacaattatggtgatgagatcgccatcgag
ctgaggagcagcgtgggagcccctgtggaggtcacccacaacttccaggtggattttgtg
tggaaatccacttcctttgacaggatgcagagtgctctgaaaacatttgcagtggatgag
acctcagtgtctgggtacatttaccacaaactgctggggcatgaggtggaagatgtcatc
atcaaatgccagctgccaaaacgtttcacagcccagggcctccctgacctcaaccactct
caggtttatgctgtcaagaccgtcctgcagcgtcctctgagccttatccagggtccccct
ggcactgggaaaacagtgacatcagccaccatcgtgtatcacctggccaggcagggcaat
gggcctgtgctggtgtgtgcccccagcaacatcgccgtggaccagctgacagagaagatc
caccagaccggcctcaaggtggttcgtctgtgtgccaagagccgcgaggccatcgactcc
cccgtgtccttcctggccctgcacaaccagatcaggaacatggacagcatgccagagctt
cagaagctgcagcagctcaaggatgagactggagaactttcctctgctgatgagaagaga
taccgggcactgaagcgcacggcagagcgggagctgctcatgaacgcagatgtgatctgc
tgtacctgtgtgggtgctggggacccccgcctggccaagatgcagttccgctccatcctc
atcgacgagagcacgcaggccaccgagcccgagtgcatggtgcccgtggtgctgggggcc
aagcagctgatcctggtgggtgaccactgccagctggggcccgtggtgatgtgcaagaag
gcggccaaggcggggctgtcgcagtcgctgttcgagcgcctggtggtgctgggcatccgg
cccatccggctgcaggtgcagtaccgcatgcaccccgccctcagcgccttcccctccaac
atcttctacgagggctcgctgcagaacggcgtcactgcagctgacagggtgaagaaaggc
tttgatttccagtggccccagcctgacaaacccatgttcttctacgtgacccagggccag
gaggagattgccagctcaggcacctcctacctcaacaggactgaagctgccaacgtggag
aagatcaccaccaagctgctgaaggccggggccaagcccgaccagatcggcatcatcacc
ccctacgagggccagcgctcctacctggtgcagtacatgcagttcagcggctccctgcac
accaagctctaccaggaggtggaaattgccagtgtggatgccttccagggcagggagaag
gatttcatcatcctgtcctgtgtgagggccaacgagcaccagggcatcggcttcctcaac
gaccccaggaggctgaacgtggccctgaccagagccaggtatggggtgatcattgtgggg
aaccccaaagccctgtccaagcagcccctctggaatcacctcctgaattactacaaggag
cagaaggtgctggtggaggggcccctgaataacctgagggagagcctgatgcagttcagc
aaaccccgcaagctggtgaacaccatcaaccctggagccaggttcatgaccacggccatg
tacgacgcgcgcgaggccatcatccccggctccgtctacgaccgcagcagccaaggccgc
ccatccaacatgtacttccagacccacgaccagatcgggatgatcagcgccggccccagc
cacgtcaccgccatgaacatccccatccccttcaacctggtcatgccccccatgcccccc
ccgggctacttcggccaggccaacggccctgctgcaggccgtggggctcccaaaggcaaa
gccgggcgcggcgggcggcagaaaaaccgatttgggattcctggcagcagccagtccaac
ctgcccaacagccaggccagccaggatgtggtgtcccagcccttctcccagggccccctg
acccagggctacatctccatgagccagccctcccagatgagccagcctgggctctcccag
ccagaattatcccaggacagttaccttggtgatgagtttaaatcccagattgacgtggcg
ctgtcacaggactcaacttaccagggggaacgagcttatcaacatggtggagtgacgggg
ctgtcacagtattag
DBGET
integrated database retrieval system
