Ficedula albicollis (collared flycatcher): 101810047
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Entry
101810047 CDS
T02815
Symbol
SLIT2
Name
(RefSeq) slit guidance ligand 2
KO
K06839
slit 2
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101810047 (SLIT2)
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Axon guidance molecules
101810047 (SLIT2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_1
Laminin_G_2
LRRNT
LRR_9
LRRCT
LRR_1
hEGF
EGF_TEN
LRR_14
EGF_DL_JAG
EGF_3
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
101810047
NCBI-ProteinID:
XP_005045475
LinkDB
All DBs
Position
4:complement(54904734..55177168)
Genome browser
AA seq
1528 aa
AA seq
DB search
MMCGWGKLPLSLGLLLAMAGAVAPQPCPAQCSCSGSTVDCHGLALRGVPRNIPRNTERLD
LNGNNITRITKTDFAGLRHLRVLQLMENKISTIERGAFQDLKELERLRLNRNNLQLLSEL
LFLGTPKLYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGAFRALRDLEVLT
LNNNNITRLSVASFNHMPKLRTFRLHSNNLFCDCHLAWLSDWLRQRPRVGLYTQCMGPSH
LRGHNVAEVQKREFVCSGHQSFMAPSCSVLHCPAACTCSNNIVDCRGKGLTEIPTNLPET
ITEIRLEQNSIKVIPPGAFSPYKKLRRIDLSNNQISEAAPDAFQGLRSLNSLVLYGNKIT
ELPKGLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA
IQTLHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSAK
EQYFIPGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQKLNKIPDHIPQYTAELRLN
NNEFSVLEATGIFKKLPQLRKINLSNNKITDIEEGAFDGASGVNELLLTSNRLESVQHKM
FKGLESLKTLMLRSNRVSCVGNDSFTGLSSVRLLSLYDNQITTVAPGSFDTLHSLSTLNL
LANPFNCNCHLAWLGDWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDGNDDNSC
SPLARCPAECTCLDTVVRCSNKGLKALPKGIPKDVTELYLDGNQFTLVPKELSNYKHLTL
IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPARTFDGLKSLRLLSLHGNDISVVP
EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTP
SKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNNDPVDFYRCTCPYGFKGQDCDIPIHAC
ISNPCHHGGTCHLKEGEKDGFWCTCADGFEGENCEVNVDDCEDNDCENNSTCVDGINNYT
CLCPPEYTGELCEEKLDFCAQNLNPCQHDSKCILTPKGYKCDCTPGYVGDHCDIDFDDCQ
DNKCKNGAQCTDAVNGYTCICPEGYSGLFCEFSPPMVLPRTSPCDNYECQNGAQCIIKES
EPICQCLSGYQGEKCEKLISINFVNKESYLQIPSAKIRPQTNITLQIATDEDSGILLYKG
DKDHIAVELYRGRVRVSYDTGSYPASAIYSVETINDGNFHIVELLAMDQILSLSIDGGSP
KIITNLSKQSTLNFDSPLYVGGMPVKNNIAALRQSPGQNGTSFHGCIRNLYINSELQDFR
NVPLQVGILPGCEPCHKKVCVHGTCHATSQSGFSCECEGGWTGPLCDQQTNDPCLGNKCV
HGTCLPINAFSYSCKCLQGHGGVLCDEEEMLLNPCQSIRCKHGKCRLSGLGKPYCECGSG
YTGDSCDKEISCRGERVRDYYQKQQGYAACQTTKKVSRLDCRGGCSSGQCCGPLRSKRRK
YAFECTDGSSFVDEVEKVVKCGCTNCPS
NT seq
4587 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgcggctgggggaagctccccctgtccctggggctgctgctggcgatggcgggc
gcggtggcgccgcagccgtgcccggcgcagtgctcctgctcggggagcaccgtggactgt
cacgggctggcgctgcgcggcgtcccgaggaacatcccccgcaacaccgagaggctggat
cttaatggaaataacatcacaagaatcacgaagactgactttgctggtctaaggcacctt
cgagttcttcagctcatggagaacaagattagtactattgagagaggagcattccaggat
ttaaaagaactggagaggctgcgcctaaacagaaataacctccagttgctttctgagctg
ctctttctggggacgccgaagttgtacaggcttgatcttagtgaaaatcagattcaagca
ataccaaggaaggcattccgaggagcagtagacataaaaaatctgcagctggattacaac
cagatcagctgtattgaggatggggcgttcagggctctgcgtgacctggaagtgctcact
ctcaacaataacaacatcactcgactatccgtggcaagtttcaaccacatgcccaaactc
agaacattccgcctgcactccaacaacctgttctgcgattgccacctggcctggctgtcg
gactggctgcggcagcggccgcgcgtggggctctacacgcagtgcatggggccctcgcac
ctccgcggccacaacgtggctgaggtccagaagcgcgagtttgtctgcagcggtcaccag
tcctttatggctccatcctgcagtgtcttgcactgccctgctgcatgcacctgtagtaac
aacattgtggactgtcgtgggaaaggccttactgagatcccaacaaaccttccagaaacc
attactgaaatacggttagaacaaaattcaatcaaggtcatacctcctggagctttctcc
ccctataaaaagcttcgaagaattgacctgagcaataaccagatctctgaagcagctcca
gatgctttccagggcttacgttcactcaattcactagtcctctatggcaataaaatcaca
gaacttccaaagggcctatttgaaggactcttttctctgcaactgctattattgaatgcc
aacaagatcaattgtctgcgagttgatgcatttcaggatctgcacaacctgaatcttctt
tctctgtatgacaacaagcttcagaccattgcaaaaggcaccttctcacccctacgtgcc
attcagaccttgcatttggctcagaacccgtttatctgtgactgccatctgaagtggctg
gcggattatcttcacacaaaccccattgagaccagtggtgcccgttgcaccagcccccgc
cggctggcaaacaaaaggatcggccagatcaaaagcaagaaattccgctgctcagctaaa
gaacagtatttcattccaggcactgaagattacagatccaaattaagtggagactgcttt
gcagatttggcttgccctgagaaatgtcgctgtgaagggaccacagtggactgctccaat
cagaaactcaacaaaattcctgatcacattcctcagtacacagcagagttgcgactaaat
aacaacgaattttcagtcctggaagctactggaatatttaagaaacttcctcagctgcgt
aaaataaacctgagcaataacaagattacagatatagaagaaggagcatttgatggagcc
tctggtgtgaatgaactattgctcacaagcaaccgtttggaaagtgttcaacacaaaatg
ttcaaaggactagaaagtctcaaaacactgatgctgaggagcaacagggtgagctgtgtg
ggaaatgacagcttcacagggctgagctctgtccgcctgctctcgctgtatgacaaccaa
atcaccacggtggcccctggctccttcgacacgctgcactcgctctccacgctaaacctc
ttggccaatcccttcaactgcaattgccaccttgcgtggcttggagactggctaaggaag
aaacgcattgtgacggggaaccctcgctgccaaaaaccctacttcctcaaagagattcct
atccaggatgtggcaattcaggattttacatgtgatgatggaaatgatgacaatagctgc
tctcccctggcccgctgccctgcagaatgtacttgtctggacacagtagttcgctgcagc
aataaaggtctgaaagctttgcctaaaggcatcccaaaagatgtgactgaactttatttg
gatggaaatcagtttacccttgttccaaaagagctttccaactacaagcatttaacactc
atagatttaagtaacaacagaatcagcactctttctaatcagagcttcagcaacatgact
cagctgctcaccttaattcttagttacaaccgcctaagatgtattcctgcacggactttt
gatgggttgaaatcacttaggttgttgtctttacatggcaatgatatttctgttgttcct
gaaggagcctttaatgatctttcagcattatcacacttggctattggagcaaatcctctt
tattgtgattgcaatatgcagtggctgtctgactgggtaaaatcagaatacaaagaacct
ggtattgcacgttgtgctggtcccggggaaatggcagataaactgcttctcacaactcct
tctaagaaatttacttgccaagggcctgtggatgttaatattcttgcaaagtgtaatccc
tgtttatcaaatccatgtaaaaatgatggaacgtgcaataatgatccagttgacttctac
agatgtacatgcccatatggtttcaagggtcaagactgtgatattcccattcatgcttgc
attagtaacccgtgccaccatggtggaacttgtcatttgaaagaaggagaaaaagatggt
ttctggtgcacttgtgcagatggatttgaaggtgaaaactgtgaagtaaatgttgatgac
tgtgaagacaatgactgtgaaaacaactctacttgtgtggatggaattaataactatact
tgcctttgtccacctgaatatacaggtgaactgtgtgaggagaaattagatttctgtgcc
caaaacctgaatccttgccagcatgattcaaagtgtatcttgacacccaaaggatacaaa
tgtgattgcacacctggatatgttggtgaccactgtgatattgactttgatgactgccag
gacaacaaatgtaaaaacggagcgcagtgcaccgatgcagttaatggatatacgtgcatt
tgcccagaagggtacagtggcttgttttgtgagttttcaccgcctatggttctgcctcgc
accagcccttgtgataactatgaatgtcaaaatggggcccagtgtatcataaaagaaagt
gaaccaatctgtcagtgtttatcaggctaccagggtgagaaatgtgaaaagctgattagt
ataaacttcgtcaacaaagaatcctatctgcaaatcccttcagctaagatacgcccccaa
accaatatcactctacagattgccacagatgaagacagtgggatcctgctgtacaaaggc
gacaaagatcatatagcagtggaactgtaccggggtagagtgagggtcagctatgacaca
ggatcatatccagcctctgctatttacagtgtggaaacaattaatgatggcaatttccac
attgtggagctactagctatggatcagattctgtctttatctattgatggaggaagcccc
aagataattaccaatttgtccaagcaatccactctgaattttgattctccgctgtatgta
ggaggcatgcctgtgaaaaataacatagcagctttacgccagtcgcccgggcagaatggc
actagcttccatggttgcatccgtaatctctacatcaacagtgagctccaggacttcaga
aatgtgccactgcaagtgggaattctgccaggctgtgagccttgccacaagaaagtttgt
gtgcatggcacatgccatgctaccagccagtcaggcttctcctgtgagtgcgaaggagga
tggaccggaccgctctgtgaccagcaaaccaacgacccgtgtcttggaaataaatgtgtg
catggtacctgcttgccgatcaatgcgttttcatacagttgtaaatgcctgcagggacat
gggggagtcctctgtgatgaagaggaaatgctgcttaacccctgccagtccatcaggtgt
aaacatggcaaatgcaggctttcaggacttgggaaaccatattgcgaatgcggcagcgga
tacacgggcgacagttgtgataaagaaatctcttgtcgaggggaacgagtccgagattac
taccaaaagcagcaagggtatgctgcgtgccagacgaccaagaaggtatcgagactagac
tgtagaggcgggtgctcgtccgggcagtgctgcgggccgctgcggagcaagaggcggaaa
tacgccttcgagtgcaccgacggctcctccttcgtggacgaggtggaaaaagtggtgaag
tgtggctgtacaaattgtccctcctaa
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integrated database retrieval system
