Ficedula albicollis (collared flycatcher): 101810874
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Entry
101810874 CDS
T02815
Symbol
DICER1
Name
(RefSeq) dicer 1, ribonuclease III
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fab03036
]
101810874 (DICER1)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101810874 (DICER1)
microRNA pathway
RISC loading complex
101810874 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
ResIII
DEAD
Helicase_C
Cas3-like_C_2
Amidoligase_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
101810874
NCBI-ProteinID:
XP_005047604
UniProt:
U3JIM7
LinkDB
All DBs
Position
5:complement(49209379..49253064)
Genome browser
AA seq
1921 aa
AA seq
DB search
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSSLDITESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLA
IQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIQKLEQILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLKELDEALAFLNDCNISVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDANETE
TEPIVDDDDIFPPYVLRPDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
HTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDI
EKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISLPNSSVVENENYCKHSTIVVPENAAHQGANK
TSSAENHDQMSVSYRTLLNESPSKLQIDVSVELAAINGVSYNKNLANGNCDLVNRDFCQG
NQLNYCRQEIPVQPTTSYPIQNLYNSENQPKPSNECTLPSNKYLDGNANRSTSDGCPIMA
VTTSTSKAINLSKDRADSEKSPCSGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYIVNQDKSNTDKWEKDEMTKENMLANGKLDDYNDDEENEDLMWRLPKEETDFEDD
FLEYDQEHIKFIDNMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSMGNAQCSSDFDDF
DYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIAD
CVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWEGTLCATRENCNSEEKNLSPNS
VSASVANSEPSLCKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKA
YLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN
NTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEED
IEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEME
PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPN
S
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgct
tcctccccaatgggtccattttttggactgccatggcaacaagaagcaattcatgataac
atttacacgccaagaaaatatcaggttgaactgcttgaagcagctttggatcataataca
atagtctgcttaaacactggctcagggaagacttttattgcagtactactcactaaagag
ctgtcctatcagatcaggggagatttcaacaaaaatggaaaaagaactgtgttcttggtc
aactcggcaaatcaagttgctcaacaagtgtcagctgtcaggacacattcagaccttaaa
gtgggagagtattcaagtttggacataactgaatcatggacaaaagagaagtggagtcag
gaattctctaagcatcaggttctggttatgacatgtcatgttgctttgactgttctgaga
aatgagtatttatccctgtcaaatattaatcttctggtgtttgatgagtgccatcttgca
atccaggatcatccataccgtgaaattatgaagatctgtgaggattatccatcatgtcct
cgaattttgggattgacagcttccattttaaatgggaaatgtgatcctgctgagttagag
gagaagatccagaaactggagcaaattttgaagagcaatgctgaaactgcaactgatttg
gtggtcttagacagatatacttctcagccatgtgagattgttgtagactgtggaccatat
actgacaaaagtgggttgtatggaagattactaaaggaattggatgaagcgcttgctttt
ctaaatgactgcaacatatctgtacattcaaaagaaagagattccaccttaatttctaag
cagatattgtcagactgtcgagctgtgttggttgttctgggaccgtggtgtgcagataag
gtagctgggatgatggtgagagagctgcagaagtatatcaaacatgaacaagaggagctg
cacaggaaatttttattgtttacagacactttcctaaggaaaatacatgcactctgtgaa
gagcacttctcgcctgcctcacttgacctgaaatttgtgaccccaaaagtaataaagctg
cttgaaatcttgcgcaaatacaaaccgtatgaacggcagcagtttgaaagtgttgaatgg
tataacaataggaatcaggataattacgtatcttggagtgattctgaagatgatgatgag
gatgaagaaattgaggagaaagagaagccagagactaatttcccatctccctttactaat
attttatgtggaattatttttgtggaaagaagatacacagcagttgttctaaataggttg
ataaaagaagctggcaagcaagatccagaactggcttacatcagtagcaattttataact
ggacatggcattggcaagaaccagcctcgtaacaagcagatggaagtagaatttagaaaa
caggaagaggttcttagaaaatttcgagcacatgagaccaacctacttattgctactagt
attgtagaagagggtgttgacatacccaaatgcaacttggtggtgcgttttgatttgccc
acggagtaccgttcctatgtgcagtcaaaaggaagagctagagcaccaatttccaattac
attatgttagcagatacagacaaaatcaaaagttttgaagaagatcttaagacatacaaa
gcaattgagaagatcctccgaaacaaatgctcaaaatctgttgatgccaatgaaactgaa
actgaacctattgttgatgatgatgatatctttccaccctatgtgttgaggccagatgag
aacagtccaagggttactattaacactgctattggacacataaataggtactgcgctaga
ctaccgagtgatccatttacacacctggctcccaagtgtaagaccagggaactacctgac
catacgttttactctactctctacctgccaatcaactcacctcttcgagcttcaattgtt
ggccctccaatgagttgtgcaagactggctgagagagttgtcgctcttatttgctgtgaa
aaactgcacaaaattggtgaactggatgatcatttgatgccagttggtaaagaaacggtt
aaatatgaggaggaacttgatttacatgatgaagaagaaaccagtgttccgggaaggcca
ggctctacaaaacgaagacagtgctatcctaaagctattccagaatgtttgagggatagt
tatcccaaacctgatcagccctgttacttgtatgtaataggaatggtgttaacgactcct
ctacctgatgagctcaacttcaggagacgaaagctatatcctcctgaggatacaacaaga
tgttttggcatattgacagccaaacctatacctcaaattcctcactttcctgtgtatact
cgctctggagaggttacaatatccattgagcttaagaaatctggttttactttgtctctg
caaatgcttgagttgataacacgactccaccagtacattttttcacatattcttcgtctt
gagaaacctgcactagagttcaaacctacagaagctgattcagcctattgtgttctacct
ctaaatgttgttgatgactccagcactttggacattgactttaagtttatggaagacatt
gagaaatctgaggcacgtacaggcattcccagtacacagtatacaaaagaaatgcctttt
attttcaagctagaagattaccaggatgcagttatcattccacgatatcgaaattttgat
cagcctcatcgattctacgtagctgatgtatacactgatcttactccactcagtaaattc
ccttcccctgaatatgaaacttttgctgaatattataaaacaaaatataatcttgacctt
accaatcttaaccagccactgctggatgtggaccacacatcttcaagacttaatcttttg
actcctcgccatttgaatcagaagggaaaagcacttccattaagcagtgctgagaagagg
aaagcaaagtgggaaagtttgcagaataaacagatactggttcctgagctctgtgctata
caccctattccagcgtcactgtggagaaaagcagtgtgcctccccagcatactttaccgc
ctgcactgccttttgacagcagaggaactaagagctcaaacagccactgatgctggtgta
ggggttaaatcacttcctgcagatttcagatatcctaacttggactttggatggaaaaaa
tctattgacagcaagtccttcatctctcttcctaactcctctgtagtagagaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaataaa
acctcttctgcagaaaaccatgaccaaatgtctgtgagttacagaacattgctcaatgag
tcacccagtaaactccaaattgatgtctcggtagaacttgcagcaattaatggtgtttct
tataataaaaatcttgccaatggcaattgtgatttagttaacagagacttttgccaagga
aatcagctgaattactgcaggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaacagtgagaaccagcccaagcccagcaatgaatgtactctaccgagt
aataaataccttgatggaaatgctaacagatctacctcagatggatgccccataatggca
gtgaccaccagtacttcaaaagctattaatctttcaaaagacagagcagattctgaaaag
agcccttgcagtgggtactcctcaaaaactctcggtcctaatcctggtctcattcttcaa
gctttgactctttcaaatgctagtgatggatttaacctggagcggctggagatgcttggt
gattcatttttaaagcatgccatcactacgtacttgttttgcacttaccctgatgctcac
gagggacggctgtcctacatgagaagcaaaaaggtcagcaactgtaacttgtatcgcctt
ggaaaaaagaaaggactgccaagtcgcatggtggtgtcgatttttgatcccccagtcaat
tggcttcctcctggttacatagtaaatcaggacaagagcaacactgacaagtgggagaaa
gatgaaatgacaaaggaaaacatgttggctaatggtaaacttgatgattataatgacgat
gaagagaatgaagacctaatgtggaggttgcccaaggaagaaacagactttgaagatgat
tttctggagtatgatcaggagcatatcaaattcattgataatatgttaatgggatcaggc
gcttttgtgaagaaaatttcactctcacacttttcaaccactgattcaaactatgaatgg
aaagcacccaaaaagtcatccatgggtaatgctcagtgttcatcagattttgatgatttt
gactatagctcttgggatgcgatgtgctatctggatcctagcaaggctgttgaagaggat
gattttgtagtgggcttctggaatccatcagaagagaactgtggtgttgatgcaggaaag
cagtcgatctcctatgacttgcatacagagcagtgcattgctgacaagagcattgcagac
tgcgtggaagccctgttgggctgctatctgaccagctgtggtgaaagagctgctcagctt
ttcctgtgttcattggggctgaaggtgctccctgtaattaaaaagactgattgggaaggc
actctgtgtgctaccagagagaactgtaacagtgaggagaaaaatctttcaccaaattct
gtttctgcttctgtagctaattcagagccttctctgtgtaaagacctggagtatggctgt
ttgaagattccaccaaggtgtatgtttgatcacccagatgctgaaaaaaccctaaatcac
cttatttctggttttgaaaactttgagaagaaaataaattacagttttaagaacaaggct
tatcttcttcaggcatttactcatgcctcttaccattataataccattactgattgttac
cagcgcttagaattcctgggagatgcaattttggactacctcataaccaagcacctttat
gaagacccacggcaacactctccaggagttcttactgacctacgatctgctctagtcaat
aataccatttttgcatcattagctgtaaagtatgactaccacaagtacttcaaagctgtc
tctcctgaactgtttcatgttattgatgactttgtgcagtttcaaatggaaaagaatgaa
atgcaaggaatggattctgagctcagaagatctgaagaagatgaagaaaaagaggaagac
attgaagtaccaaaggccatgggggatatatttgagtcccttgctggtgccatttatatg
gatagtggaatgtctttggaaatggtttggcaagtgtactatccaatgatgaggccacta
atagaaaaattttctgctaatgtgccccgttccccagtgcgagagctgctggaaatggag
ccagagacagccaaatttagtcctgcggaaagaacttacgatggaaaggtcagagttaca
gtggaagttgtaggaaagggaaagtttaaaggtgttggcagaagctacaggattgccaaa
tctgcagcagcaagaagagcactacgaagcctcaaagcaaatcaacctcaggtcccaaac
agctga
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