Ficedula albicollis (collared flycatcher): 101811687
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Entry
101811687 CDS
T02815
Symbol
PCF11
Name
(RefSeq) PCF11 cleavage and polyadenylation factor subunit
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101811687 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fab03021
]
101811687 (PCF11)
03019 Messenger RNA biogenesis [BR:
fab03019
]
101811687 (PCF11)
Transcription machinery [BR:
fab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101811687 (PCF11)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101811687 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DNA_pol3_a_NI
DUF6980
Ycf2
Motif
Other DBs
NCBI-GeneID:
101811687
NCBI-ProteinID:
XP_005038404
LinkDB
All DBs
Position
1:86257715..86278946
Genome browser
AA seq
1700 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNVPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQRMSPTPHMTVKPPHQTAVPSEKNKPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSVTSQSETKGNKTAQAEKQNSTKSEKSKASEKTQKKELEQSK
AKSKSPSPLKNKLPDIKDSKSQECESTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRN
TEKKEKEEHKTCEHRVVGSRNKVINGAVQKQDASTEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKTGKIRQIGPKQSHVEEGTQATRDERNSN
KRNVKQEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEES
KNSQQNDEHQALVKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFD
RKEPFAERSRRHSPVSGTTRPFAENLSPLESRRRLEDQRATKGARGSDPYDSWGESDEFR
DTLRQQGKSTAEFQKIDGDALCRFDNREERQLLGQAGVREEPRSPFNERFKRARYEDPEK
APFPDSPGSRFGGVEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAGGSSS
RIDGPAGQAAMRFEGPLVGTGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGARFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQLGGGLRFEGPHGQPM
GPHGPSGGGLRFEGPHGPSGGGLRLEGPRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAG
PRFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQAQARFETAIPQRFDGPHQPA
SRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFD
GSPGPNFNGPAGPGAQSFPLRAAGHYFEEKGLQGPQYGNFSNMPMGSNQVSLMSGQPGPY
GQGQQYLPNPGSFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQA
NETSTQPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTS
QTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAH
EEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKI
YHPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQEAEESCDSPKIKEEPDDTPPA
CAEENTPASTEIKTEPEESV
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgttggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgtacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ctagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcag
ggatcatctagtatagcttcagttccagcaccttccaagcaacgcatgtctcccacacct
catatgacagttaaaccacctcatcagactgctgtgccatctgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtgaacagggatcctcggcttaataggatg
ggtcagcattcttctcatactaaagatcagtctcataggaaagaattttcaccgagtgtg
accagtcagtctgagaccaagggaaacaaaacagcacaggctgaaaaacagaactcaaca
aagtcagaaaaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaacagtccaaa
gcaaaatctaaatcaccatctcctttgaaaaataagttgcccgatattaaagacagtaaa
agccaggaatgtgaaagcactaaggtttctgacatcagtaagcgggatccaagactgaaa
agacatcttcaagataagtcagaggggaaggaagaggaggtcaaagaaaagaggagaaat
acagagaagaaggaaaaggaggagcataagacctgtgaacatagagtggtggggagcaga
aataaagtgattaatggtgctgttcagaaacaagacgcatctacagaggagtcagaaaag
cagggtggaaaacaaggaagatcaagtagtaggaaacggtcacgatcacgctctcctaag
gcaagatcaccatctacacattctccaaaaagacgagagaggagatctcctaaaagaaga
cttcggagtttatctcctacttcatcaactcctaaaactggaaagatacgtcagataggc
cctaaacaatctcatgttgaagaaggcacacaagcaacaagagatgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagcccaagaagaa
agaccccaagagacagccactcagcattctgcaaaagcttctccagatccaaaggagaat
gcagaaaactggcagggatccaaatcaggcaagaggtggaaatctggttgggaagaaagt
aaaaactcacagcagaatgatgaacaccaagcacttgttaaatccccacaccaaagacat
cgggaaaactggcctgctggtaaaggaattctatcaccccgagcaccaaagcagcaacac
cggttgagtgtggatgccaatttacaaattcccaaagaattgacatctgcaagtaaaaga
gaattgcttaagaaggctaatgaccgcttaacatctggtgaaataacacaagatgagttt
ctcgtggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggtttgaaaaagaaacctcttctatcg
gatgcagaattaacatactatgaacataaagctaaactaaaaaggacacaagttcagcat
tcactgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacctgat
gcattactttctggaatagaatgcgagcaggcgaaagccaagcggggggtacagtttgac
agaaaagaaccctttgcagaaagatcaaggagacactctcctgtaagtggcactacaagg
ccttttgctgaaaacctgtcaccgcttgagagtcgacgaagacttgaagaccagcgtgct
actaaaggagctagaggttctgatccttatgacagctggggagaatcggatgaatttaga
gatactctcagacaacaggggaaaagtacagcagagtttcagaaaatagatggagatgca
ctctgtaggtttgataatcgtgaagaaagacagcttcttgggcaagctggtgttcgagag
gaaccgaggtcgccattcaatgagcgtttcaaaagagctagatatgaagatccagagaaa
gcaccatttccagacagtccaggatcaagatttggaggtgttgaagcaaagcagagaata
agtgcactgatggaagacagacctctgtttgatggctcacctagaccaactgctgcaagg
gttggggtcgatggacaaggaagtccttttgttgatggtcctgctggtggttcaagttcc
agaattgatgggccagctggacaggctgctatgagatttgaggggcctttggtggggaca
ggtgcatctcaatttgatggaccactggcaggagcagggggagctggagccctgagattt
gatgggccaccagggcagctggcaggggccctgagatttgaaggacccccaggccaggtt
ggcggaggaggtccgctgcggtttgagggacctcttgggcctctgcggtttgaggggcct
gcagggcagcctgtgggtggtgctagatttgaaggtcctggggttggtctcaggtttgag
ggtccccatggtcagccttcaggtggtctcaggtttgagggacctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccagggggtggcctcaggtttgaggggccacatctacagccattg
gggccccatgggcaacttggaggtggcctcagatttgaggggccacatggtcagcccatg
gggccacatggaccatcaggtggtgggctcaggtttgaggggccgcatggaccatcaggt
ggtgggctgagactggaaggaccacgtggtcagccgggtctaggtcctaggttgattgat
ggaccagtacaccagggagctggtggacttagatttgatggtcctcttggtcgggctggt
ccgagatttgatggctgtcatggagctgggttcgatggacagcctggacagctgtctctc
ctgcaaagatttgatggaattcatggacagcctggtccaaggttggcacctggccagcag
gcacaagcaagatttgaaacagccatacctcaaagatttgatggacctcaccagccagcc
tctaggtttgacttgcctcttggccttcagggtgcacgttttgaaaatgtagctaaccat
cctgcctcaagactagaaatgtcaccatatggacaaggtggtccgtttgttgaacatcct
ggccagggctacaatggaccagctcatggaatgcagttccagagacctgatatatttgat
ggttctcccggaccaaatttcaatgggccagctggcccaggagcacagagcttcccactg
agagcagctggacattactttgaagaaaaaggtctccagggtcctcagtatggaaatttc
agtaatatgccaatgggaagtaatcaggtttctcttatgtctggtcaaccaggaccttat
ggccagggtcagcagtatttgccaaatcctggaagttttgtccagaaccctgcaggagct
ctttcccattcatatcctgataaccaccttggacaggttgatgtgaatgaattgtttgct
aaactgctgaaaacagggatcctcaaattgtctaaaactgattccacttcagcacaagcg
aatgaaacatcaacccagccgactgctgaagaagaagatgatgatcagaatgaagaccaa
aacgttccagacctcactaacttcatagttgaagaacttagacagcgttatgatagtgtt
ataaatcgactgtacactggaattcagtgttactcctgtggaatgagattcactacttca
cagacagatgtttatgcagatcatttagattggcattatcgccagaaccggacagaaaaa
gatgttagcagaaaaatcacacacaggagatggtactacagtttaacagactggattgaa
ttcgaagaaatagcagatctagaggagcgtgctaagagccagttctttgaaaaagctcat
gaagaggttgtattgaagacgcaggaagctgcgaaagagaaggagtttcagagtgtccca
gctggaccagctggagcggttgagagctgtgaaatttgccaagaacaatttgaacagtat
tgggatgaggaagaggaagagtggcacctcaagaatgctatcagggtggatgaaaagatt
taccatccatcttgttacgaagattaccagaatacatcatcatttgattgcacaccatct
cccagcaagactccttcagaaaatccactaaatataatgttggacattgttaaacaagaa
gcagaagagtcctgtgactcacctaaaatcaaagaagaacctgatgacacccctcctgcc
tgtgcagaagaaaacacacctgcatctacagaaatcaaaacagaacctgaggagtctgtt
taa
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integrated database retrieval system
