Ficedula albicollis (collared flycatcher): 101812101
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Entry
101812101 CDS
T02815
Symbol
PCDH11X
Name
(RefSeq) protocadherin 11 X-linked
KO
K16498
protocadherin delta 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
101812101 (PCDH11X)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
fab01009
]
101812101 (PCDH11X)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
fab04515
]
101812101 (PCDH11X)
Protein phosphatases and associated proteins [BR:
fab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101812101 (PCDH11X)
Cell adhesion molecules [BR:
fab04515
]
Cadherins
Protocadherins
101812101 (PCDH11X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
K319L-like_PKD
Cadherin_4
TMEM154
Motif
Other DBs
NCBI-GeneID:
101812101
NCBI-ProteinID:
XP_005045764
UniProt:
U3JMW9
LinkDB
All DBs
Position
4A:complement(2338331..2771149)
Genome browser
AA seq
1245 aa
AA seq
DB search
MDLLSGTYLLAVLLACIVFQSGAQEKNYTVREELPENVLIGNLLKDLNLTLDPDVPLSSP
LQFKLVYKTGDVPLVRVEENTGEIFTAANRIDREKLCAGILSESRCFYEVEVAVLPDEVF
RLVKIRFLIEDINDNAPLFPSTVINISIPENTAINSRYSVPSAIDPDIGVNGIQHYELLK
PKTAPKRTFGSITNDQGQNVFGLDITETPEGDKWPQLIVQQILDREQKDTYVMKIKVEDG
GSPPRSSTAILQVTVTDVNDNRPVFKENDIEVSVPENAPVGTSVSQLHATDADLGSNAQI
HFYFSNQISSLAKRLFAIDNTTGLITIREPLDREESPVHKLTVLASDGSSTPSRATVTVN
VTDINDNVPSIDTRYIINPVNGTVLLSEKAPLNTKIALITVMDKDADQNGKVTCFTDHDV
PFRLKPVFDNQFLLETATFLDYEATREYAIKIVASDSGKPPLNQSAMLLIKIKDENDNAP
VFTQPVIGLSIPENNAPGTQLTKISATDADSGRNAEISYILGSDAPPIFNLDRRTGILTA
VRKLDREKQDRYSFTVLAKDNGMPPLQTNATVTVSVLDQNDNSPAFTHSEYNFYVPENLP
MYGTVGLITVTDADAGDNAAVTLSILNGRDNFIIDPLTGVIRPNITFDREQQGSYTFQVK
AVDGGRLQRSSTAKVTINVVDVNDNRPVFVIPSSNYSYELVPTSASPGSVVTKVFAVDND
TGMNAELRYSIIGGNSRGLFTIDQLTGNITLKEKVIGSDHGLHRLVIKVNDLGQPESLYT
IALVHLFVNETVTNSSYVQELVRRNMETPVGQNIGDGEITPQTNDYVKIIIAIIAGTMTV
ILVIFVTALVRCRQTPRHKVVQKNKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVT
IEESKPDDPGHEHINGTLDIPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPT
FQIKPETPVPPKKHHVIQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKTPGP
IHTRQHTKEVGRPQTPLKETTLEPWTQPQPQRRVTFHLPDGSQESCSDSGLGDHEPASGA
STSHPLPLGFPQDEFYEQASPNSRTEGDGNSDPESTIEVNLQKALAEASENCTQECLILG
HSDTCWMPPALAPFPQPNASLPSFGFQPGWGRGAGPEGRHTLGRPLPKDDSDKGQAGPRP
QFYNTCERHCAGEDPVKVIPLANFGASRPAPGAGGSSSFVHEHQL
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggacttgctgtctggaacctacctcttggcagtcttgttggcctgcatcgtgttccaa
tctggcgcccaggagaagaattacaccgtgcgggaagaactgcctgaaaatgtcctcatt
ggcaacctgctcaaggatctcaacctaaccctggacccagacgtgcccctctcctccccg
ctgcagttcaagctggtgtacaagaccggggacgtgcccctggtgcgggtggaggagaac
accggggagatcttcacggccgccaaccgcatcgaccgcgagaagctgtgcgccggcatc
ctcagcgagagccgctgcttctacgaggtggaggtggccgtgctgcctgatgaggtcttc
aggctggtcaagatcaggttcctaatcgaggatataaatgacaacgctcctcttttcccc
tctacagtaattaacatctcgatccctgagaacacagccattaattcccgctactctgtc
ccgtctgccatcgacccggacatcggggtgaacggcatccagcattatgagctcctcaag
cccaaaacagctccgaaaaggacatttggatccattacaaatgaccagggtcaaaatgta
tttggtcttgacataactgagacacctgagggagataagtggcctcaactgatcgtccag
cagatcttggatagggagcagaaggacacctatgtgatgaaaatcaaagttgaagatggt
gggagccccccaaggtccagcactgccatcctgcaggtgacagtgaccgatgtcaacgac
aaccgcccggtgttcaaggagaacgacatcgaggtcagcgtgccggaaaacgcccccgtg
ggcacctccgtgtcccagctgcacgccaccgacgctgacctgggctccaatgcgcagatc
cacttctacttcagcaaccagatctccagcctggccaaaaggctctttgccatcgataac
accactggcctcatcaccatcagggagccgctggacagggaggaatctcctgtgcacaaa
ttgaccgttttggcaagtgatggcagctcgactccctcgagagccacagtgactgttaat
gtcacagacatcaatgacaatgtcccatccatagacacgaggtacatcatcaaccctgtg
aatgggacagtgcttttgtctgagaaggctccccttaatacaaaaattgcattgataaca
gtgatggacaaggacgcggatcagaatgggaaagtgacctgttttacagatcacgatgtc
cctttcaggctaaaaccagtgtttgataatcagtttctcctggagacagccacgtttcta
gactatgaagctacccgggaatatgccatcaaaatagtggcttcagattcagggaagcct
cccttaaaccagtctgcaatgctcctgatcaaaattaaggacgaaaacgacaacgcccca
gttttcacacagcctgtcataggcctgtccatccctgaaaacaacgcccctggtactcag
ctaaccaagatcagtgccacagacgccgacagcgggcgcaatgccgagatcagctacatc
ctgggttctgatgcccccccaattttcaacctggaccgccgcacaggcatcctgacagcg
gtgagaaagctggacagagaaaagcaagacaggtactccttcactgtgctggctaaggat
aacgggatgccacctttgcagaccaatgctaccgtgacggtgtcagtgctggaccagaac
gataacagccctgctttcacacatagtgaatataatttctacgtgccagaaaacctgccc
atgtatggcacagtggggcttatcaccgttacggacgctgacgcgggagacaacgctgcg
gtcaccctctctatcttaaatggtagagataatttcattatagatccacttactggtgtg
ataagacctaacattacctttgatagggagcagcaggggtcatacactttccaggtgaaa
gcagtggatggaggaagactgcagcgttcctcgactgccaaagtgaccatcaatgttgtt
gatgtaaatgataacaggcctgtttttgttattccctcatctaattattcctatgagttg
gtcccaacgtcagccagcccagggtctgtagtcaccaaagtctttgcggttgataatgac
acgggaatgaacgcagagctccgctatagcatcataggtgggaactccaggggcttgttt
accattgaccaattaacaggcaatattaccttgaaagagaaggtgattggatcagatcat
ggcctgcacagactggtgatcaaggtgaatgacctgggacagccagagtctctttacaca
atagctctcgtgcacttgtttgtgaacgagaccgtcaccaacagctcctacgtgcaagag
ctggtgcgtaggaatatggaaactccagtgggccagaacattggggatggtgagataacc
ccacagaccaatgattatgtcaagatcatcattgccattattgcaggcaccatgacagtt
attctggtaatttttgttaccgctttagtccggtgccgccagacgcccaggcacaaggtt
gtccaaaaaaataagcagagtggtgagtgggtttcccccaaccaagagaacaggcagatc
aagaaaaagaagaagaagaagaagcgctctccaaagagtctcctcctcaactttgtgact
attgaagagtctaagcctgatgatcctggccacgagcacataaatggcactttagacatt
cccgtagagctggaagaacagactatgggaaaatataactgggccaccacaccaaccaca
tttaaacctgatagcccagacttagcaaagcactacaagtctgcttctccacagcctacc
tttcaaattaaacctgagactcctgtaccccccaagaagcaccatgtcattcaggaattg
cctctagataacacctttgtggtgggctgtgactcactttccaaatgctcatccagcagc
tcggacccttacagtgtttctgaatgcagctgtcaaggaggcttcaagaccccaggcccc
atacacaccagacagcacacaaaggaagtgggaaggccacaaactcctttgaaagaaaca
accttggagccctggactcagccacagccccagcgccgggtcaccttccacctgccagat
ggctcccaggagagctgcagtgacagcggcctgggcgaccacgagcccgccagcggggcc
agcacgtcccacccgctgcccctgggcttcccccaggacgagttctacgagcaggcgtcg
cccaacagccgcaccgagggcgacggcaactccgaccccgagtccactatcgaggtgaac
ctgcagaaagccctggccgaggcctctgagaactgcacgcaggagtgcctcatcctcggc
cactccgacacctgctggatgccgccggcgctggcgccgttcccgcagcccaacgcctcc
ctgccgtccttcggcttccagccaggctggggccgaggagccgggcccgagggacgccac
accctcggcaggccgctgcccaaggacgacagtgacaaaggccaggctgggcccaggccc
cagttctacaacacctgcgagagacattgcgccggcgaggatcccgtcaaggtcatcccc
ctggccaacttcggcgcctcccgcccggcgccgggggccggcggcagctccagcttcgtc
cacgagcaccagctgtga
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