Ficedula albicollis (collared flycatcher): 101812388
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Entry
101812388 CDS
T02815
Symbol
PRPF4
Name
(RefSeq) pre-mRNA processing factor 4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101812388 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fab03041
]
101812388 (PRPF4)
Spliceosome [BR:
fab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101812388 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
EIF3I
WDR55
PRP4
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
NBCH_WD40
WD_LRWD1
WD40_like
Motif
Other DBs
NCBI-GeneID:
101812388
NCBI-ProteinID:
XP_005055411
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Position
17:complement(1391530..1401037)
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AA seq
753 aa
AA seq
DB search
MATARAPAARGAARPPEPPKAKAAEEGEAPPAKRAPIFYGSLEEKERERLAKGEAGLLAK
EGMKAALEAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDSEVKACLR
ALGEPITLFGEGPAERRERLRNILSVVGTDALKKTRKDDDRSKKSKEEYQQTWYHEGPRS
LKTARLWLANYSLPRAAKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCSQIGDDRP
LSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKATVSLDKKD
VSLASCAADGSVKLWNLESEEPVADIEGHSMRVARVMWHPSGRFLGTTCYDHSWRLWDLE
AQEEILHQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGI
NFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVSQPREFPADGRLRQHGQD
LDPPWLVPTEDPGRARGEGDGAGHLPGWAAHCHLLLRQNLQALDSRVAHRDRDVKDFGLL
FYIKEQNRNPMCYSSCSHGCSGVWVCLKHQCWLGLGWHQVLGHFPLFGLFLYCRYTFCCN
FDLCNSTLPSEFSSQMFCKHLQYPQSTSGLVCTSASVTAFLTFLFGRSVTSNFDLHLGRE
LRGRGTWCPPSPASTWVSLEGDLHPPGFTYSRCPRPGNLFQVPPCVLLLELSHGLGVANP
RQHLLFRVCCVRSLSAGLPCSALGRAFVLVCLN
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgcgcgggctccggcggcgcgcggcgcggcgcggccccccgagccccccaag
gccaaggctgccgaggagggcgaggcgcccccggccaagcgggcgcccatcttctacggg
agcctggaggagaaggagcgcgagcggctggccaagggcgaggcggggctgctggccaag
gagggcatgaaggctgccttggaggctggcaacatcaacatcagctctggggaggtgttt
gacctggaggaccacatgagcgagcggcaggccgaggtgctggcggagttcgagcgccgc
aagcgcgcgcggcagatcaacgtgtccacggacgactcggaggtgaaggcgtgtctgagg
gccctgggggagcccatcacactctttggagaggggcctgccgagcgcagggagaggtta
aggaacatcctctcagtggtcggcacagatgcattgaaaaagaccaggaaagatgatgac
aggtcaaaaaagtccaaagaagagtatcagcaaacctggtaccacgagggcccacgcagt
ctgaaaacagccaggctgtggctggccaactactcactccccagggcagcgaagcggctg
gaggaggccaggctgctcaaggagatccccgaggccaccaggacatcccagaggcaggag
ctgcacaaatccctgaggtccttgaataatttctgcagtcagatcggggatgatcgcccg
ctgtcctactgccacttcagccccaactccaaactcctggccacagcctgctggagtggg
ctgtgcaagctctggtctgtgcctgactgcaacctggttcacaccttacgaggacacagc
accaacgtgggggcaatcgtgttccaccccaaggccacagtgtccctggacaagaaggat
gtgagcctggcctcctgtgcagctgatggctctgtcaaactctggaacctggaaagtgag
gagccggtggccgacatcgagggacacagcatgcgagtggcccgggtgatgtggcacccg
tccgggcgcttcctgggcaccacctgctacgaccactcgtggcgcctgtgggacctggag
gcgcaggaggagatcctgcaccaggaggggcacagcaagggcgtctatgacatcgccttc
cacaccgacggctccctggcgggcacgggaggcctggatgcctttggccgggtgtgggac
ctgcgcacgggccgctgtatcatgttcctggaagggcacctgaaggagatctacgggatc
aacttctccccgaacgggtaccacgtggccacgggcagtggggacaacacgtgcaaggtg
tgggacctgcggcagaggaaatgcatctacaccatccctgcccaccagaacctggtcacc
ggcgtcagccaaccacgggaatttcctgctgacgggcgcctacgacaacacggccaagat
ctggacccaccctggctggtccccactgaagaccctggcagggcacgaggggaaggtgat
ggggctggacatctccctggatgggcagctcattgccacctgctcctacgacagaacctt
caagctctggacagccgagtagctcacagggacagggacgttaaggacttcgggttgctt
ttttatattaaagaacaaaataggaatccaatgtgttacagcagctgcagtcatggctgc
tctggagtttgggtgtgtttgaagcaccagtgttggcttgggcttggttggcatcaagtc
ttggggcatttcccactttttggactgtttttatactgcaggtacactttctgctgtaat
tttgatctgtgtaactctaccctcccttctgagttcagctcccagatgttctgcaaacat
ttgcagtacccacagagcacctcaggtttggtgtgtacttcagcttctgttactgccttt
ctcaccttcctttttggtaggagtgtgacttcaaactttgatttgcatttagggagagag
ctcagagggagaggcacgtggtgccctccttcccctgcctccacatgggtgtctctggaa
ggagatctgcatcctcctggattcacttacagcagatgtccaaggccagggaatcttttc
caggtaccaccttgtgttctactccttgaattgtcccatggactgggtgttgcaaatcca
cgtcagcatctcctgttcagggtttgctgtgtgaggtcactcagtgcaggattgccttgt
tctgccctggggagagcttttgtacttgtttgtttaaattga
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