Ficedula albicollis (collared flycatcher): 101812566
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Entry
101812566 CDS
T02815
Symbol
CSTF3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101812566 (CSTF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101812566 (CSTF3)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
101812566 (CSTF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
101812566
NCBI-ProteinID:
XP_016154338
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Position
5:complement(2634409..2682963)
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AA seq
762 aa
AA seq
DB search
MDPRRDPPPSLGRDPSLLPKSSQTAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQP
IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS
YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT
AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV
MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV
LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY
ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRTIFKKAREDAR
TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL
FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVD
RYKFMDLYPCSASELKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDT
QQMIPFQPRHLAPPGLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRC
KLPDTVDEAVRIITGGLPEIAVEGNGPCLWGVRGRTVDEAVRIITGGLPEIAVEGNGPVE
NNTILNKAVKRSHEDSDDDEEKGSVVPPVHDIYRARQQKRIR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggatccccggcgagatccgccaccgtcgctcggtcgtgatcccagcttactgccaaaa
agcagccagactgctgaatatgtcccagaaaaagtgaagaaagctgaaaagaaactagaa
gaaaatccatatgaccttgacgcttggagcattctcattcgagaggcacagaatcagcct
atagacaaagcacggaagacctatgaacgccttgttgcccagttccccagttctggcaga
ttctggaaactgtacattgaagcagagattaaagcaaaaaattatgacaaagtggaaaag
ttatttcagcgctgccttatgaaggttttacacattgatttatggaaatgttacctttcc
tatgtacgagaaaccaaggggaagctacctagttacaaagaaaaaatggctcaggcatat
gattttgctctggataagattggcatggaaatcatgtcataccagatctgggtggattac
atcaattttttgaaaggcgtagaagcagtaggatcctatgcagagaaccagaggatcaca
gctgtccgtagggtttaccagcgtggctgtgtgaaccccatgataaacatagagcagctc
tggagagattataacaagtatgaagagggcatcaatattcacttagccaagaagatgatc
gaggacaggagtagagattatatgaatgcacgacgtgtggcaaaggaatacgagacggtg
atgaaggggctggaccgcaacgctccctccgtgcccccccagaacaccccccaggaggct
cagcaggtggacatgtggaagaagtacatccagtgggaaaagagcaaccctctacgaaca
gaggatcaaactctcataacaaaaagagtgatgtttgcctatgagcagtgtctcctggtg
ctgggccatcacccagacatctggtatgaagctgctcagtacctggagcagtccagcaag
ctgctggctgagaaaggggacatgaacaatgctaaacttttcagtgatgaggctgctaat
atttatgaaagagcgatcagcactttattgaagaagaatatgcttctttattttgcatat
gcagattatgaagagagccgcatgaagtacgagaaggtgcacagcatctacaaccggctc
ctggccatcgaggacatcgaccccacgctggtttatatccagtacatgaaatttgccagg
cgagcggaaggcattaaatccggaaggacgatatttaagaaagccagagaggatgcccgg
acccgccaccatgtctatgtcactgcagctttaatggagtattattgtagtaaggataag
tctgtggcctttaagatttttgagctagggctgaaaaaatatggggacattccagaatat
gtactggcatatatcgactacctttcccaccttaatgaggacaacaatacaagagttttg
tttgaacgtgttttaacttcagggagccttccacctgagaaatctggggaaatctgggct
cggtttttagcctttgaaagtaacattggggatctggccagcatcctgaaagtggaaaaa
cggaggtttacagcattcaaggaagaatatgagggcaaagaaacagctctgctggtggac
aggtacaagttcatggatctgtacccttgctctgccagcgagctgaaggcccttggttat
aaggatgtctcccgtgccaagctagcagcaataattccagaccctgtggttgcaccttcc
atcgtgcctgtcctcaaggatgaagtggacaggaaacctgaatatcccaaaccagacact
cagcagatgattccatttcagccaaggcacttagcacctccaggtttacatcctgtccca
ggtggggtatttccagttccaccagcagctgtagttctcatgaagctcctgccacctcct
atttgttttcagggtccctttgttcaagtggatgagctcatggagatattcagaagatgc
aaactgccagacactgtcgatgaagctgtgcggatcatcactggtggcctgcctgaaata
gccgtggaaggcaatggaccttgtctctggggtgtcagggggcggactgtcgatgaagct
gtgcggatcatcactggtggcctgcctgaaatagccgtggaaggcaatggacctgtggaa
aacaacaccattctcaacaaggctgtgaagagatcacatgaggattctgatgacgacgag
gagaaaggatctgtagttccccctgtacatgacatttacagagcacgacagcaaaagaga
atccggtga
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integrated database retrieval system
