Ficedula albicollis (collared flycatcher): 101812999
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Entry
101812999 CDS
T02815
Symbol
UPF3A
Name
(RefSeq) UPF3 regulator of nonsense transcripts homolog A (yeast)
KO
K14328
regulator of nonsense transcripts 3
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03013
Nucleocytoplasmic transport
fab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101812999 (UPF3A)
03015 mRNA surveillance pathway
101812999 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101812999 (UPF3A)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101812999 (UPF3A)
mRNA cycle factors
P-body specific factors
101812999 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
101812999
NCBI-ProteinID:
XP_016154731
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All DBs
Position
1:28463241..28488477
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AA seq
473 aa
AA seq
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MDAPPLQESPRRDTDAPPNPPPPPSPPSPLPPPLHPAPGKQREEKKTALSKVVIRRLPPC
LTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDILLFRDRFDGYVFID
NKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYRKFLENYCADEDKICANPEIL
LGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRKRR
EEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELASEKHKEKGEEADIEENKWDKSPGS
GSIKFKSLESSLKELKERSQNDSDKEQRDLERRFREKEPERQRYRLDDGRKHRTHYEFEK
FMRRHEEELKWGKGYNQDRGKKGNYNYSFTVEAVDKLGKEDKCDDMASKKERIRNKDRPA
MQLYQPGARIRTHMGPTSKTYDCSGKSFEDALDKKYEADNSTGASSEKTEEAE
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggacgctccgccgctgcaggagtcgccgcgccgcgacacggacgctccgccgaacccg
ccgccgccgccttccccgccgtccccgctgccgccgccgcttcacccggcgccggggaaa
cagcgggaggagaagaaaacggcgctgagcaaagtggttattcgaaggcttcctccttgt
ctaaccaaggagcaactggaggaacagctgcatcctctacctgcccatgattattttgag
ttttgcactgctgatcccagcctttatcctcatctctactcaagagcatacattaacttt
agaaatcctgaggacatccttctttttagagatcgctttgatggctatgtcttcattgat
aataaaggtttggaatatcctgcagtggttgagtttgctccattccagaagatttcgaaa
aagaagctgaagaagaaagatgccaaagctgggagcattgaagaagatccagaatatagg
aaatttttagagaattattgtgctgatgaagacaagatctgtgccaatcctgagattctt
ttgggagagattgaggccaaaacaagggaactcattgctagaagaacaacaccccttttg
gaatatattaaaaatagaaaattagaaaagcagagaatacgagaagagaaaagagaagaa
cgaaggcggagagaattggagaagaagcgtttgcgggaggaagagaaaaggaagcgcagg
gaagaagaaagacgtaaaagaaaagaagtggagaagcaaaagaaaatttctgaaaaagaa
ataaggatcaagcttctcaagaagcctgaaaaaggagatgagctggccagtgaaaagcac
aaagaaaaaggtgaagaagctgacattgaggaaaacaaatgggataaatcacctggatct
gggagcataaaattcaaatctttggagagttcattgaaagaacttaaggaaaggtcacaa
aatgacagtgacaaagagcaaagagatttggagagaagatttcgagaaaaagaacctgaa
agacaaaggtatcgattggatgatggcagaaagcatagaactcattatgagtttgaaaag
tttatgagacggcatgaagaagagctgaaatgggggaaaggatacaaccaagacagagga
aagaaagggaactacaactacagcttcactgtggaggcagtagacaaactgggtaaagag
gacaagtgtgatgacatggcatccaaaaaggagcgcataagaaataaggatcgtccagcc
atgcagttgtaccagccaggagctcgcatccgaacacacatgggacctacaagtaaaacc
tatgactgcagtgggaaatcctttgaagatgctcttgataaaaagtatgaggcagataat
tcaactggagctagttctgaaaagactgaagaagcagaataa
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