Ficedula albicollis (collared flycatcher): 101813477
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Entry
101813477 CDS
T02815
Symbol
PNLDC1
Name
(RefSeq) PARN like, ribonuclease domain containing 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101813477 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101813477 (PNLDC1)
Enzymes [BR:
fab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101813477 (PNLDC1)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101813477 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
101813477
NCBI-ProteinID:
XP_016152863
LinkDB
All DBs
Position
3:57886554..57897079
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AA seq
503 aa
AA seq
DB search
MEFTGLHSTSLQNNEPSLFDSPAERYVKARQSVQRFAPVQLGLAIFSKENSNKYVVHSYN
FFLFPSTLGIRDVEFTLSASSIQFLSHYGFDFNKFLKDGIPYMNEVQEKILRQRLLAGTW
KVCSTSCADRDVLKKAIDEVTSWITAAKEEDTMILQDLNGYHMLEVQLVLRQALKNVWTE
PLGDKEVMVKKVNPQHRQLLENSSYDHCQKKLILLSARGFTNLFLILVKAKKPLVGHNML
MDLMHLHDKFYRPLPESYEEFKRNIHNLFPVIIDTKTVIKSVQKKCLFPRVSSLLEVHAV
LCSNLNPKGPPCPVIALASGCSRYAEKKSPHEAGYDAFLCGSVLLMSAHLLLCRSTDDAV
EAEPSFSQYLTVLAEHVNKVNFIRGGVSSINFSGEDAPCRHPPALVVHVRGWPGLTERQI
YQEFKARCRFDVRRLSKNQFILLSNKYKQVKLVLRDYRHHPHLQVSVYRHWRHSPSVNCL
LQISGIVALWSLLAFALGGARSC
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggagtttactggtttgcattcgacttccctacaaaacaacgagcccagcctgtttgac
tcccctgcggagcggtatgtgaaggccaggcagagtgttcagcgcttcgctcctgttcag
cttgggctggcaatattctcaaaagaaaattcaaacaagtatgtggtgcattcatacaac
ttttttctctttccctcaacactgggaataagagatgtcgaattcaccctctctgcatct
agtattcagttcctgtctcactatggctttgacttcaacaagttcctcaaagatggaatc
ccatacatgaatgaggtacaggagaagatccttaggcagcgcctcttagctggtacctgg
aaagtctgcagcactagttgtgcagacagggatgtcctgaagaaagctattgatgaagtg
acctcttggataactgcagcaaaagaagaggatactatgattctgcaggatttgaatggc
tatcatatgcttgaagttcagctggttctgaggcaggctctcaaaaatgtttggacagag
cctcttggagacaaggaggtaatggtgaaaaaagtgaatccacagcatcgtcagcttctg
gagaactcttcttatgaccactgtcagaaaaagctcattctcctgtctgcccggggcttt
accaacctcttcctgatacttgttaaagccaaaaagcccctggtgggacacaacatgctt
atggaccttatgcatcttcacgacaagttctacaggcccctcccagaaagctatgaggag
tttaaaaggaacattcacaacctgtttcctgtcatcatagacaccaagactgtaataaaa
tctgtgcagaagaaatgtctgtttcctcgagtatctagtcttttggaggtgcatgcagtt
ttgtgcagcaacctaaatcccaaaggtccaccgtgccctgttatagctcttgccagtggc
tgctcaagatacgctgagaagaaatctcctcatgaggcaggctatgatgcatttctctgt
ggttcagttcttctgatgtcagctcatttgctactgtgcagatccacagatgatgcagtg
gaggctgagccttctttctcgcagtatctcactgtgttagctgagcacgtgaacaaagtg
aatttcatccgaggtggcgtttcaagcattaatttttctggggaagatgctccttgccgt
catccccctgccttggttgttcatgtccgaggctggccagggctgacagagagacaaatt
taccaagagtttaaagctcgttgtcgctttgatgtcagacggctttcaaagaaccagttc
attctgctctccaataaatacaagcaagtcaagctggtcctgcgggattacaggcaccac
cctcacctgcaggtctccgtctatcgccactggaggcactcgccgagcgtgaactgcctg
ctgcaaatctctggcattgtggcactgtggtctctcttggcctttgcgcttggaggagct
cgtagctgttga
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