Ficedula albicollis (collared flycatcher): 101813628
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Entry
101813628 CDS
T02815
Symbol
PMS1
Name
(RefSeq) PMS1 homolog 1, mismatch repair system component
KO
K10864
DNA mismatch repair protein PMS1
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fab03400
]
101813628 (PMS1)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
101813628 (PMS1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HMG_box_2
HATPase_c_3
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
101813628
NCBI-ProteinID:
XP_005049322
UniProt:
U3JP79
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All DBs
Position
7:7411321..7455054
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AA seq
933 aa
AA seq
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MKQLPGETIRLLSSSQVITSVVSVVKELIENSLDASATGIDVKLENYGFSKIEVRDNGSG
VKVDDVPVMAVKHYTSKISSSEDLERLTTYGFRGEALGSICSVSEVLVTTKTAADDFSIQ
YALDNNGHVTSKKPSHLGQGTTVTVLNLFKNLPVRKQFYSTNRKCKEELKKVQDLLTAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMSSMVPFQHNCEYPEINLSGFL
PKADSDSSLTSLSSSERSFIFINNRPVLQKEILKLIRQYYSQMTQKDCSRLYPVFFLSIT
VPASAVDVNITPDKTQVLLHYKESVLLAVENVLKSLYGPLPAAVPGESNKTDVTSEDMFV
HRTDQTDVAVNEMGPSGNDELHAHTSFLSLSSDVQNCQAGKNAEICLNHQTFNGDNVHSR
LDKREASKSDTFPDSSLNLLCEEEQNGQNMAGVQSNGVPVDPESNKANEHLLSSDNMDKV
GNNEEALVPKDLPEISADSWSMGSAFKDSLGDKLEPVKVLIPELERTTNKQNEYTGEKSS
DPQISNQSIKKKNVISEKFGHVTAYDLINSRIIKKPKSAFEFFTHECRPKLINDNPKTSM
NDILLTVEEQWKNLNEEEKQNYEIKATKDQERYNREVKKANAQPLHRPAKEAGKHKPKLK
TSASDQQKLDNIFHGQIEKKGKLEQPVKIVTVPFSLSSCRRHLQRQERNVSDEQELLLIR
RQSFPDVWILATEKNVKVLNPYRLEEALLCKRLLMNHKLPVEKLDDPIVLTDSLLGGSQY
MAALHKMQKNYQSFHRSGYLSDPRLVANGFQIKVIEGVSATESHLEIEGMANCLPYYGIS
DLKEILNAVVNRNAKEVYECRPLKVINYLEGEAVRLTRQLPLHLSKEDVQNTIYRMKQQL
GKQNKGCVHGRPFFHHLTDIPEVDKHNSMEIIQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagctgcctggagagacaattcggctcctttcgagttctcaggtgattacttca
gttgtcagtgtggtgaaggagctgatagaaaattccttggatgccagtgctacaggcatt
gatgttaagctggagaattatgggtttagcaaaattgaagtaagagacaatggcagtgga
gtcaaggttgatgatgttccagttatggcagttaaacactacacctcaaaaatcagctct
tctgaggaccttgaaaggctgacaacgtacggttttcgtggggaagctttgggatcgatt
tgcagtgtatcagaggttttggtcacaacaaagacagctgctgatgatttcagcattcag
tatgctttggataacaatgggcatgtaacctctaaaaagccttcccatcttgggcaaggt
actacagtaacagtcctcaatttgtttaagaatcttcctgtaagaaagcagttttactca
acaaatagaaaatgtaaggaagaactgaaaaaagtccaagatctactgacagcatatggt
attataaaaccagacttgaggataacattaacacataataaggcagttatttggcagaag
accagggtatcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgagc
agtatggtaccttttcaacacaactgcgaatatcctgagataaatctttctggatttctc
ccaaaagctgattcagatagttctttgacaagcttgtcaagttcagaaaggagtttcatt
tttataaataatcgaccagttcttcagaaggaaatactgaagttaattcgccaatactac
agtcagatgacacaaaaggactgtagtcgtttgtatcctgttttctttttgagtattact
gtacctgcctctgctgtggatgtgaatataacacctgataaaacacaagttttgctgcat
tataaggaatctgtcttacttgctgttgaaaatgtgttgaaatcactgtatgggccacta
cctgctgcagtccctggtgaaagtaataaaacagatgttacctcagaagacatgtttgtt
catagaacagaccaaacagatgtggctgttaatgaaatgggaccatctggaaatgatgag
ctacatgctcatacttcattcctttcactcagcagtgatgtgcaaaactgtcaagcagga
aaaaacgcagagatctgcttaaatcatcagacatttaatggtgataatgtgcacagtcgc
ctggacaaaagagaggcttctaagagtgatacctttccagacagttccttaaatttattg
tgtgaggaggaacagaatggacagaatatggctggtgttcaaagtaatggtgttcctgtg
gaccccgagtctaataaagccaatgagcatcttttgagctctgataatatggacaaagta
ggtaacaatgaggaagccttagtccctaaggacttacctgaaatctctgctgatagctgg
agtatgggaagtgcatttaaagacagtctgggagacaagctggaacctgttaaagtcttg
attcctgaacttgaaaggacaactaataagcaaaatgaatacactggtgaaaaaagcagt
gatccacaaatctcaaatcaaagcataaagaaaaaaaatgtgataagtgaaaaatttgga
catgtgacagcttatgacttaattaatagcagaataataaagaaaccaaagtctgcattt
gaatttttcacacatgaatgtcgtccaaaattgataaatgataatccaaagaccagtatg
aatgacatcctgctgacagttgaagagcagtggaagaatttgaatgaagaggaaaaacag
aattatgaaataaaagccactaaggaccaggaacggtacaacagagaagtcaagaaagcc
aatgcacagccactgcaccgcccagccaaggaggcaggaaaacacaaacccaagctaaag
acttctgcatctgaccagcagaagcttgacaatatatttcatggccagattgaaaagaag
gggaagctggaacagcctgtgaaaattgtgacagtgcctttttctctgagttcctgtaga
cgtcaccttcagagacaagagagaaatgtttcagatgaacaggagcttctcctgatccgt
cgtcagagttttcctgatgtctggatacttgctactgaaaaaaatgtaaaggtgctgaat
ccatacagattggaagaggccctgctatgtaagagattattgatgaaccataagcttcct
gtagagaaactggatgatccaattgtgctaacagacagtcttcttggtggatctcagtat
atggctgctcttcataaaatgcagaagaattaccagagtttccacagatcaggttatttg
tcagatccaaggcttgtagcaaatggattccagataaaagtgatagaaggtgtttcggct
acagagagtcatctggaaatagaagggatggcaaattgtctgccatattacggaatttct
gatttgaaagaaattctgaatgcagtagttaacagaaatgcaaaggaagtatatgaatgt
aggcctctcaaagtgataaattatttagagggagaagcagtacgtttaactcggcagctg
cccttacatttgtcaaaagaagatgtgcaaaacacaatttacaggatgaagcaacagctt
ggaaagcaaaataaaggctgtgttcatggtcgtcctttttttcaccacttaacagatatt
ccagaagttgacaagcacaactccatggaaattattcagtaa
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