KEGG   Ficedula albicollis (collared flycatcher): 101813628
Entry
101813628         CDS       T02815                                 
Symbol
PMS1
Name
(RefSeq) PMS1 homolog 1, mismatch repair system component
  KO
K10864  DNA mismatch repair protein PMS1
Organism
fab  Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:fab00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fab03400]
    101813628 (PMS1)
DNA repair and recombination proteins [BR:fab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     101813628 (PMS1)
SSDB
Motif
Pfam: DNA_mis_repair HMG_box HMG_box_2 HATPase_c_3 HATPase_c HMG_WDHD1 HMG_box_5 CHDNT
Other DBs
NCBI-GeneID: 101813628
NCBI-ProteinID: XP_005049322
UniProt: U3JP79
LinkDB
Position
7:7411321..7455054
AA seq 933 aa
MKQLPGETIRLLSSSQVITSVVSVVKELIENSLDASATGIDVKLENYGFSKIEVRDNGSG
VKVDDVPVMAVKHYTSKISSSEDLERLTTYGFRGEALGSICSVSEVLVTTKTAADDFSIQ
YALDNNGHVTSKKPSHLGQGTTVTVLNLFKNLPVRKQFYSTNRKCKEELKKVQDLLTAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMSSMVPFQHNCEYPEINLSGFL
PKADSDSSLTSLSSSERSFIFINNRPVLQKEILKLIRQYYSQMTQKDCSRLYPVFFLSIT
VPASAVDVNITPDKTQVLLHYKESVLLAVENVLKSLYGPLPAAVPGESNKTDVTSEDMFV
HRTDQTDVAVNEMGPSGNDELHAHTSFLSLSSDVQNCQAGKNAEICLNHQTFNGDNVHSR
LDKREASKSDTFPDSSLNLLCEEEQNGQNMAGVQSNGVPVDPESNKANEHLLSSDNMDKV
GNNEEALVPKDLPEISADSWSMGSAFKDSLGDKLEPVKVLIPELERTTNKQNEYTGEKSS
DPQISNQSIKKKNVISEKFGHVTAYDLINSRIIKKPKSAFEFFTHECRPKLINDNPKTSM
NDILLTVEEQWKNLNEEEKQNYEIKATKDQERYNREVKKANAQPLHRPAKEAGKHKPKLK
TSASDQQKLDNIFHGQIEKKGKLEQPVKIVTVPFSLSSCRRHLQRQERNVSDEQELLLIR
RQSFPDVWILATEKNVKVLNPYRLEEALLCKRLLMNHKLPVEKLDDPIVLTDSLLGGSQY
MAALHKMQKNYQSFHRSGYLSDPRLVANGFQIKVIEGVSATESHLEIEGMANCLPYYGIS
DLKEILNAVVNRNAKEVYECRPLKVINYLEGEAVRLTRQLPLHLSKEDVQNTIYRMKQQL
GKQNKGCVHGRPFFHHLTDIPEVDKHNSMEIIQ
NT seq 2802 nt   +upstreamnt  +downstreamnt
atgaaacagctgcctggagagacaattcggctcctttcgagttctcaggtgattacttca
gttgtcagtgtggtgaaggagctgatagaaaattccttggatgccagtgctacaggcatt
gatgttaagctggagaattatgggtttagcaaaattgaagtaagagacaatggcagtgga
gtcaaggttgatgatgttccagttatggcagttaaacactacacctcaaaaatcagctct
tctgaggaccttgaaaggctgacaacgtacggttttcgtggggaagctttgggatcgatt
tgcagtgtatcagaggttttggtcacaacaaagacagctgctgatgatttcagcattcag
tatgctttggataacaatgggcatgtaacctctaaaaagccttcccatcttgggcaaggt
actacagtaacagtcctcaatttgtttaagaatcttcctgtaagaaagcagttttactca
acaaatagaaaatgtaaggaagaactgaaaaaagtccaagatctactgacagcatatggt
attataaaaccagacttgaggataacattaacacataataaggcagttatttggcagaag
accagggtatcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgagc
agtatggtaccttttcaacacaactgcgaatatcctgagataaatctttctggatttctc
ccaaaagctgattcagatagttctttgacaagcttgtcaagttcagaaaggagtttcatt
tttataaataatcgaccagttcttcagaaggaaatactgaagttaattcgccaatactac
agtcagatgacacaaaaggactgtagtcgtttgtatcctgttttctttttgagtattact
gtacctgcctctgctgtggatgtgaatataacacctgataaaacacaagttttgctgcat
tataaggaatctgtcttacttgctgttgaaaatgtgttgaaatcactgtatgggccacta
cctgctgcagtccctggtgaaagtaataaaacagatgttacctcagaagacatgtttgtt
catagaacagaccaaacagatgtggctgttaatgaaatgggaccatctggaaatgatgag
ctacatgctcatacttcattcctttcactcagcagtgatgtgcaaaactgtcaagcagga
aaaaacgcagagatctgcttaaatcatcagacatttaatggtgataatgtgcacagtcgc
ctggacaaaagagaggcttctaagagtgatacctttccagacagttccttaaatttattg
tgtgaggaggaacagaatggacagaatatggctggtgttcaaagtaatggtgttcctgtg
gaccccgagtctaataaagccaatgagcatcttttgagctctgataatatggacaaagta
ggtaacaatgaggaagccttagtccctaaggacttacctgaaatctctgctgatagctgg
agtatgggaagtgcatttaaagacagtctgggagacaagctggaacctgttaaagtcttg
attcctgaacttgaaaggacaactaataagcaaaatgaatacactggtgaaaaaagcagt
gatccacaaatctcaaatcaaagcataaagaaaaaaaatgtgataagtgaaaaatttgga
catgtgacagcttatgacttaattaatagcagaataataaagaaaccaaagtctgcattt
gaatttttcacacatgaatgtcgtccaaaattgataaatgataatccaaagaccagtatg
aatgacatcctgctgacagttgaagagcagtggaagaatttgaatgaagaggaaaaacag
aattatgaaataaaagccactaaggaccaggaacggtacaacagagaagtcaagaaagcc
aatgcacagccactgcaccgcccagccaaggaggcaggaaaacacaaacccaagctaaag
acttctgcatctgaccagcagaagcttgacaatatatttcatggccagattgaaaagaag
gggaagctggaacagcctgtgaaaattgtgacagtgcctttttctctgagttcctgtaga
cgtcaccttcagagacaagagagaaatgtttcagatgaacaggagcttctcctgatccgt
cgtcagagttttcctgatgtctggatacttgctactgaaaaaaatgtaaaggtgctgaat
ccatacagattggaagaggccctgctatgtaagagattattgatgaaccataagcttcct
gtagagaaactggatgatccaattgtgctaacagacagtcttcttggtggatctcagtat
atggctgctcttcataaaatgcagaagaattaccagagtttccacagatcaggttatttg
tcagatccaaggcttgtagcaaatggattccagataaaagtgatagaaggtgtttcggct
acagagagtcatctggaaatagaagggatggcaaattgtctgccatattacggaatttct
gatttgaaagaaattctgaatgcagtagttaacagaaatgcaaaggaagtatatgaatgt
aggcctctcaaagtgataaattatttagagggagaagcagtacgtttaactcggcagctg
cccttacatttgtcaaaagaagatgtgcaaaacacaatttacaggatgaagcaacagctt
ggaaagcaaaataaaggctgtgttcatggtcgtcctttttttcaccacttaacagatatt
ccagaagttgacaagcacaactccatggaaattattcagtaa

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