KEGG   Ficedula albicollis (collared flycatcher): 101813913
Entry
101813913         CDS       T02815                                 
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101813913 (CSTF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fab03019]
    101813913 (CSTF1)
Messenger RNA biogenesis [BR:fab03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     101813913 (CSTF1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd CSTF1_dimer WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_NUP159_NUP214 PROPPIN VPS8_N Beta-prop_WDR11_1st Frtz Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 101813913
NCBI-ProteinID: XP_005057452
LinkDB
Position
20:complement(13153974..13164729)
AA seq 480 aa
MSGRRVAAACDRRQLPRGMGSMAAPLLDPRPLRLPFLEADAPPRQSLLTMYRTKVSLKDR
QQLYKLIISQLLYDGYINIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDSAVQYAIGR
SDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADAS
IKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASG
SRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQC
FVSCNPQDQHTDAICSVNYNASANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCS
AIFSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQVHRTQAVFNHTEDYVLLP
DERTISLCCWDSRTAERRNLLSLGHNSIVRCIVHSPTNPGFMTCSDDYRARFWYRRSTTD
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgtcgggtcgccgtgtcgctgcagcgtgtgacagacgacagctgccccggggcatgggg
agcatggcagcgccgctgctcgacccgcgcccgctccggctgccctttctcgaggctgac
gcccccccaaggcagtccctgctcacaatgtataggacaaaagtcagtttgaaagaccgt
cagcaactttacaaactgataattagtcagctgctctatgatggatacatcaacattgcc
aatggcttgataaatgagatcaaaccacagtctgtctgtgcaccctctgaacaactgctg
cacctaattaagttaggcatggagaacgacgacagcgccgtgcagtacgccatcggccgc
tcggacaccgtggcaccgggcaccggcatcgacctggagttcgacgccgacgtgcagacc
atgtcccccgaggcgtccgagtacgagacctgctacgtcacctcccacaaggggccctgc
cgcgtggccacctacagcagggacgggcagctgatcgccaccggctcggccgacgcctcc
atcaaaatcctggacaccgagaggatgctggccaagagtgccatgcccatcgaggtcatg
atgaatgagacagcacagcagaacatggagaaccaccctgtgatccggactctgtacgac
cacgtggatgaagtgacgtgtttagctttccacccaacagagcagatcctggcatctggc
tcaagggactacacacttaaattgtttgattattcaaaaccttctgccaaaagagccttc
aaatacatccaggaagcagagatgttacgctccatttccttccacccttctggggatttc
atcctggtggggacccagcacccaacccttcgtctgtacgacatcaacaccttccagtgc
ttcgtgtcctgcaacccccaggaccagcacaccgacgccatctgctccgtcaactacaac
gccagcgccaacatgtacgtgacaggcagcaaggatggctgcatcaaactctgggatggg
gtctccaaccgctgcatcaccacctttgagaaagcacatgatggagctgaagtctgctct
gctattttttccaaaaattccaagtatatcttgtccagtgggaaagactctgtggctaag
ctctgggagatctccactggtcggacgctggtgaaatacacaggtgcgggtctgagcggc
cgccaggtgcacaggactcaggctgtgttcaaccacacggaggattacgtgctgctgccc
gatgaaaggaccatcagcctgtgctgctgggactcgcgcacggccgagcgcaggaacctg
ctgtcgctgggccacaacagcatcgtgcgctgcatcgtgcactcgcccaccaaccccggc
ttcatgacctgcagcgacgactacagggccaggttctggtacaggagatccaccacggac
tga

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