Ficedula albicollis (collared flycatcher): 101814446
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Entry
101814446 CDS
T02815
Symbol
COL4A1
Name
(RefSeq) collagen type IV alpha 1 chain
KO
K06237
collagen type IV alpha
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04510
Focal adhesion
fab04512
ECM-receptor interaction
fab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101814446 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101814446 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101814446 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
fab04147
]
101814446 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101814446 (COL4A1)
Exosome [BR:
fab04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101814446 (COL4A1)
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101814446 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101814446
NCBI-ProteinID:
XP_016154583
UniProt:
U3K7K7
LinkDB
All DBs
Position
1:complement(25989204..26117467)
Genome browser
AA seq
1669 aa
AA seq
DB search
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLVTPGVLKGEKGFPGQPGLPGPPGAS
GFQGPMGPQGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGEQGFPGLPGSGFKGDKGEPGKPGPRGKPGKDGEPGLKGEPGL
PGGFGVPGRPGEPGLKGDKGERGYPGPPGRMIDAGPVDTFGEKGDPGVSGLPGVKGQKGE
KGFPGAQGIPGPPGRPVPDRVGSPGVPGERGEKGEKGSPGFPSPGMPGRDGFPGLPGPPG
PPGPPGVTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGEACALCDKVGPPGLPG
PQGPPGPAGFPGQAGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFTYDSILK
GEKGEPGFPGQPGVPGREGRPGKDGFPGPQGPKGVAGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGAAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQQGL
RGDPGLPGLQGLQGPSGAPGLGPPGLPGPAGQPGPQGPPGFPGVKGERGFPGVPGLDMPG
PKGDKGSPGQPGVPGSVGLPGLPGPQGAVGLKGSAGPKGEMGVMGTPGLPGTPGPVGDRG
LPGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDNMDMVSLKGQKGDQGEKGDHG
EAGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGFPGDPGVPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGAPGEKGEPGRTGSPGLSGD
KGEKGSAGIPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGV
PGPAGAIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGNQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPG
LKGAKGEQGSNGWPGTPGGPGMKGDPGFQGLPGTPGLPGDIGPKGDLGPPGVPGVPGPKG
TPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGQPGQKGEAGPYGPPGPRGFPGPPGPDGVPGAMGPPGAP
SVAHGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRQT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtccgcc
gcgggatgttctggttgtggcaaatgcgactgcagtggagtaaaagggcaaaagggagaa
aggggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccaggacttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagtatcaggctttccaggaaacccaggccttcctggcatc
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactggaagtataggacctcca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttgtaactcctggtgtg
ctaaaaggtgaaaaaggattccctggtcaacctggactgcctggtccacctggagcttca
gggtttcagggaccaatggggccacaaggtcctccaggagagccaggtcccccagggcca
ccaggacttccaggcgagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aagggtgaacaaggggtaaggggccccccaggacccccaggaccagcacctcatatgaaa
gaaaaagggagtgaaatcataaagggagaaaagggtgatccaggtgaaaagggcgaacag
ggattcccaggattgccaggttcaggtttcaaaggagacaagggtgaacctggaaagcct
ggtccacgtggaaagcctggaaaagatggtgaaccaggactgaaaggagaacctggtttg
cctggagggtttggggttccaggacgacctggggagcctggcttaaagggtgacaaagga
gagcgaggttatccaggacctccaggaagaatgatagatgctggaccagtagataccttt
ggtgaaaaaggagaccctggagtttcaggtttgcctggagtgaaaggtcaaaaaggtgaa
aaaggctttcctggtgcacaaggaatcccaggacctccaggtcgaccagttccagaccgg
gtaggatcacctggtgtccctggggagagaggtgaaaaaggtgaaaagggttctccagga
ttcccttcacctggaatgcctggaagagatggtttcccaggcctccctgggccgccaggt
ccaccaggacctccaggagtaacagatggaattgatcagtgccagcagggagaacctggt
gcaccaggtagtcctggacttccaggaagagatggatttccaggagagatgggagagaaa
ggtgacaaaggcgaggcctgtgccttgtgtgataaagtaggacctcctggacttccagga
ccacaagggccaccaggtccagcaggtttcccaggacaagcaggtttcaagggtgacaga
ggcttacctggacttgatggccttccaggggtgcctgggccccctggcactccaggactt
atgggcagccctggggcaaaaggagaacctggagattttacttacgattctatcctgaaa
ggcgaaaagggagaacctggtttcccaggacaaccaggcgttcctggaagagaaggaaga
ccaggaaaagatggatttccaggtccccagggtccaaaaggagtagcgggtacagctggc
ttgaaaggagagcgtggtccccctggccagcctggattccctggagtgcgtggtgaaaga
ggttttcctggccctcctgggataggtgctgcaggattacctggtgaaaaaggagacaga
ggctttgctggaaccccaggtttaccaggactcccaggagcaaagggtgaagcaggacga
acgatatcgctccctggacctcctggggcagatggccttcctgggcctcctggctttcct
ggaccccaaggtgacaaagggaatcccgggcttccaggtagacctggcctaccaggagaa
aaaggtgctgttgggcagccaggtatagggttccctggacctccaggtcccaaaggtttc
caaggtcagcctggctcacctggtctgccaggaactccaggaacccctggtctggatggt
ttgccaggagttccaggtttacaaggccaaaagggtgagcctggtgttggtctacctggc
cctaaggggttgccaggcccccctggcccagctggaatccctggagaaaagggcaatcca
gggctgcctggtttacgtggcgagcaaggctttccaggcatacctggacagcaaggatta
agaggtgaccctggcctcccaggtctccaaggcctgcagggcccttcgggggcaccgggg
ctgggccccccaggactgccaggacctgccgggcagccgggaccccagggaccgccagga
tttcctggagtaaaaggagaaaggggcttccctggtgtcccaggtctagacatgccagga
ccaaaaggggataaaggaagcccgggccagccaggagtgccaggctctgtggggttacct
ggcctgccaggtccccagggggctgtggggctgaaaggatcagcaggacccaaaggagaa
atgggagttatgggaactcctggattgccaggaactcctggaccagttggagatcgaggg
ttacctggtgaaaaaggtagccaaggtttcaaaggtgtaattggaccacagggggatcct
ggtgttaagggagataaaggtgaagctggtctcccaggaaaacctggaacaatagacaac
atggacatggttagcctcaaaggccagaagggagatcaaggagaaaaaggggaccatgga
gaagcaggagaaaaagggctacgtggggattatggagaaccaggaattccagggcgagat
ggtgaacctggtactccgggacaaccaggaccaaaaggtgatcaaggcccccccgggttc
ccaggggatccaggagttccaggacaaaaaggatcggttggtgaaatgggtttgccagga
acacctggagaaaagggtcttcctggagtaccaggttcaccaggcacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttcca
ggggctcctggtgagaagggagaaccaggaagaacgggtagtccaggtttatctggagat
aagggtgaaaagggtagtgcaggaattcctggaatgccgggtgccccaggtcccaaaggt
tcccctggcatggcaggatttccaggaagccctggccgccatggagaaaagggtgaaaaa
ggactccctggcttaagtgggattccaggtttaaaaggagaaccaggtgaacctggtgtt
ccgggtcctgctggtgccattggtcagaagggtgaaccgggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtcttccaggtagaggacttccaggatttcccggt
gcaaagggagataaaggtgcaaaaggtgaagtgggttttccaggatccccggggagtcca
ggcatcccaggtctgaaaggggaaccaggatatgcaggtccaccaggccctaaggggaac
caaggtcttcctgggctaccaggaagtgcaattgaaggccctaaaggagacagaggaccc
caaggccaacctggtcttccaggtttgccaggtccaacagggccaccaggacctccaggt
ctgaaaggggccaaaggagagcaagggagcaatggctggccagggactcctgggggtcca
ggaatgaaaggtgatccaggtttccaaggactgccaggtacacctggtttgccaggagat
attggtcctaaaggtgatctcggacctccaggagttccaggtgtcccaggtccaaaagga
actcctggcttcccaggccttaagggtgagcgaggtgaccaaggccttcctggatctaaa
ggtttacaaggcccaccaggtccaccaggtccttttcagcttattaaaggggatcctggc
ttacctggacctgtaggaccagttggtctcaagggattcccaggacttccaggtcccaaa
ggacaacaaggggtgacaggaccttcaggtgtacctggaccacctggtagtccagggttt
gatggtcagcctgggcagaaaggagaagctggtccttatggtcccccagggcccagagga
ttccctggtccgcctggccctgatggcgtgcccggggccatggggccaccaggggcacca
tctgtggctcatggcttcctcgtcaccagacacagtcagaccattgaggagccatcgtgt
ccctttggaacaaggctcatttaccacggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacagcaggaagctgtcttcgtaaattcagtaccatg
cctttcttattctgcaatatcaacaacgtctgtaattttgcatcaaggaatgactactcc
tactggctgtctactcctgaacccatgccaatgaatatggctcctatcactggtgataac
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgtt
cacagtcaaacaatccaaataccaccgtgtcctgaaggctggagttcactttggattggt
tactcctttgtcatgcacaccagtgctggtgcagagggctctggccaggccctggcgtcc
cctggttcctgcctggaggagttccgcagcgctcccttcatcgaatgccatggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagaaaggaatgag
atgttcaagaaaccgactccctcaactttaaaggccggggatctacgctcgaatgttagc
cgttgtcaagtctgtatgagacaaacataa
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