Ficedula albicollis (collared flycatcher): 101815098
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Entry
101815098 CDS
T02815
Symbol
ARID1A
Name
(RefSeq) AT-rich interaction domain 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101815098 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fab03000
]
101815098 (ARID1A)
03021 Transcription machinery [BR:
fab03021
]
101815098 (ARID1A)
03036 Chromosome and associated proteins [BR:
fab03036
]
101815098 (ARID1A)
Transcription factors [BR:
fab03000
]
Eukaryotic type
Helix-turn-helix
ARID
101815098 (ARID1A)
Transcription machinery [BR:
fab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101815098 (ARID1A)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101815098 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
101815098
NCBI-ProteinID:
XP_016159169
LinkDB
All DBs
Position
23:7311171..7347473
Genome browser
AA seq
1801 aa
AA seq
DB search
MDQMGKMRPQPYGGNNPYTQQQGQQQGHYPGQPYGPQRYPMGMQGRAQSAMGSISYAQQM
PPYGQQGPGAYGQQSQTPYYNQQSPHPQQQQQQPYPQQQQSQSPYQQQQQQQQPPAPSSS
YTPAPPPSAYAQQRFPPPQELSQDSFGSQASSAPSMASSKGQEDMNLNLQSRPSSLPDLS
GSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSP
ASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDTILHPAMNQASIAQDRGYMQRNPQMPQYS
SPQPGSALSPRQSSGAQMHAGMGPYQQNSMGSYGPQGGQYGPQGYPRQPNYNAMSNASYP
GAAMGGSINPQLHGQGAVPPYSGLPPGRMGHGAMGSRPYGPSMGSMPPQVGSGMCPPPAM
NRKAQEAAAAAMHAAAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPY
PMGGNMANNSAGMAASPEMMGLGDVKLTPATKMNNKADGTPKAESKSKKSSSSTTTNEKI
TKLYELGGEPERKLWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYISVKEIGGLTQVN
KNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQT
KIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMPPLPGIRSNSVGLQD
AFADGSDGAFQKRNSLTPNAGYQPSMNTSDMMGRMSYEPNKDPYSSMRKAPGSDPFMSSG
QGPTSGMGDPYNRAAGPGMANMAMGQRQHYPYGAPYDRVRTEPGMGAEGSLGSGTPQPSI
LPSTPDSGMYSPSRYPQQQQQQQQRHDSYGNQFSTQGTTSGSPFPSQQTTMYQQQQQQNY
KRPMDGSYGLPAKRHEGELYSVPYSSGQPQPQQPLPPAQPGGGGGGGGGGGGGGGGSLYN
QYGSTYPAERRAGQSQFPFQFGRERVSAGAAQQSIPPQMMGGMQPAPEGPQQGPLWQGRN
ELGYGSYPNRQSSGAAPQGPAYHGVTRTDEILHSDQRVNHEGPWPSHGNRQPPYGPSAPV
PPMTRPPQSNYQTPPSMQNHIPQVSSPAPLPRPLENRTSPSKSPFLHSGMKMQKAGPPVP
ASHIAPAAVQPPLIRRDITFPPGSVEATQPVLKQRRRLTAKDIGTPEAWRVMMSLKSGLL
AESTWALDTINILLYDDNSIMTFNLNQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQ
RTLLDPERFCKSSASSPEEGEEDDEPRSLNCEEEEEDEEEEEAAFSSKDKVPLESSEEKL
VSKFDKLPVKVVQKNDPFVVDYSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFESKSEL
PLPHKRASCSSALRKRSAAESAPSPREGEAPAPDGSSEKRITATMDDMLSARPGSLAGDE
EEVKASETAKESSKFPFVISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCICV
SNIIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCN
KVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPILDGLLHWAVCPSAEAQDPFP
TLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVCR
EMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQAGLMHMQSPPFE
ATSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQ
S
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atggatcagatggggaagatgaggcctcagccctacggagggaacaacccctacacacag
cagcaggggcagcagcagggccactaccccgggcagccctacggcccccagagatacccc
atgggcatgcagggccgggcacagagcgccatgggcagcatctcctatgcacagcagatg
cctccgtacgggcagcagggccccggcgcctacgggcagcagagccagactccctactac
aaccagcagagcccccacccacagcagcagcagcagcagccctacccgcagcagcagcag
tcccagtccccctaccagcagcagcagcagcagcagcagccccccgccccctcctcgtcg
tacacgcccgcgccgccgccctcggcctacgcccagcagcgcttccccccgcctcaggag
ttatctcaagactcatttgggtcccaggcatcctctgctccctcaatggcttccagtaaa
gggcaagaagacatgaacttgaatcttcagtccagaccttccagcctgccggacctgtct
ggttccatagatgacctgcccatggggacagaaggagccctgagccctggagtaagcaca
tcagggatttccagcagccaaggagagcagagtaacccagctcagtctcctttctcgcca
catacctctcctcacctgccaggcatcagaggaccctccccctccccagttggatctcca
gccagcgttgctcagtcccgctccggccccctctcccctgctgcagtcccaggcaatcag
atgcctccccgccctcccagcgggcagtcggacaccatcctgcaccctgccatgaaccag
gccagcatcgcgcaggaccgaggctacatgcagaggaacccccagatgccccagtacagc
tccccccagcccggctcggcgctgtccccccggcagtcctcgggggcgcagatgcacgcg
ggcatggggccctaccagcagaactccatgggcagctacgggccccagggcggccagtac
ggacctcaagggtacccccggcagcccaactacaacgccatgtccaacgccagctacccc
ggcgcggccatgggcggcagcatcaacccgcagctgcacgggcagggcgcggtgccgccc
tacagcgggctgcccccgggcaggatgggccacggggccatgggcagccggccctacggg
cccagcatgggcagcatgcccccccaggtgggcagcgggatgtgccccccgcccgccatg
aaccgcaaggcgcaggaggcggcggctgctgccatgcacgcggctgcggccaactccatc
cagaacaggcctcctggttatcccaacatgaatcaggggggaatgatgggcactggacct
ccctatgggcagggaattaacagcatggctggcatgataaacccccagggcccaccctac
cccatggggggcaacatggccaacaactctgcagggatggcagcaagccctgaaatgatg
ggactgggggatgtcaaactaacacctgcaactaaaatgaacaacaaggcagatgggacg
cccaaagcagaatccaagtcaaagaagtccagttcctcaactaccaccaacgagaagatc
accaagctgtacgagctgggcggggagcccgagaggaagctgtgggtggatcggtacctg
gccttcactgaggagaaggccatgggcatgaccaacctgccagccgtgggcaggaagccc
ctggacctgtacaggctctacatctcagtcaaggagattgggggattgactcaggtcaac
aagaacaagaagtggcgtgagctggccaccaacctgaacgtgggcacgtcgagcagcgca
gccagctctctgaagaagcagtacatccagtgcctgtacgccttcgagtgcaagatcgag
cgcggcgaggatccccctcccgacatcttcgcagctgctgactccaaaaagtcccagacc
aagatccagcctccatctccagcgggttcaggctccatgcagggcccccagacacctcag
tccaccagcagctccatggcagaaggaggagacttgaagccaccgactccagcgtcgacg
ccacacagtcagatgccccctttgccaggcatcaggagtaactcggtggggctgcaggat
gcctttgcagacggcagcgacggcgcgttccagaagcggaactcgctgactccgaacgcc
ggctaccagcccagcatgaatacctctgacatgatggggcgcatgtcgtacgagccaaat
aaagatccttacagcagcatgaggaaagctcctggaagcgatcccttcatgtcctcaggg
cagggccccaccagtggcatgggtgacccttacaaccgcgctgccggcccgggcatggcc
aacatggccatgggccagcggcagcactacccctacggagccccctacgaccgagtcagg
acggagcccgggatgggagccgagggcagcctgggcagcgggaccccccagcccagcatc
ctgccctccacgcccgactcgggcatgtactcgcccagccgctacccccagcagcagcag
cagcagcagcaaagacatgattcctatggcaatcaattctccactcaaggcacaacctcg
ggcagccccttccccagccagcaaaccaccatgtatcagcagcagcagcagcagaactac
aagcggccgatggacggcagctacgggctcccggccaagcggcacgagggcgagctctac
agcgttccctacagctcgggccagccgcagccgcagcagccgctgcccccggcgcagccg
ggggggggggggggggggggggggggggggggggggggggggggggggagcctgtacaac
cagtacggcagcacctaccccgccgagcgccgcgccggccagagccagttccccttccag
tttggccgggagcgcgtgtccgccggcgccgcccagcagagcatccccccgcagatgatg
gggggcatgcagccggcgcccgaggggccgcagcaggggccgctgtggcagggcaggaac
gagctgggctacggcagttaccccaaccggcagagctcgggcgccgcgccccagggcccc
gcctaccacggcgtcactcgaacagatgagatcctgcattcggaccagagggtcaaccac
gagggaccatggccttcccacggcaaccggcaacctccctacggcccctccgcccccgtg
ccccccatgaccaggcccccccagtccaactaccagaccccccccagcatgcagaatcac
attcctcaggtatccagcccagcacctctgcccagacctctggagaaccgcacgtctccc
agtaaatccccgttcctgcactcggggatgaagatgcagaaggcggggccgcccgtgccc
gcctcgcacatcgcaccagcagccgtgcagccgcccctgatccgccgggacatcaccttc
ccgcccggctccgtggaggccacgcagcccgtgctgaagcagaggaggcggctgacggca
aaagatatcggaactcctgaagcctggagagtgatgatgtctctgaagtcggggctgctg
gctgaaagtacgtgggccttagataccataaacatcctgctctacgatgacaacagcatc
atgaccttcaacctcaaccagctgccaggcttgctggaactcttggtggaatatttccgg
cgctgcctgatcgagatctttggaatcctgaaggaatacgaggtaggagacccagggcaa
agaacactattagatcctgaaaggttctgcaaatcctcagcttcctcccctgaagaaggg
gaggaggacgacgagccacggagcctgaactgtgaggaggaagaggaggacgaggaagag
gaggaggctgcattttcaagcaaggacaaagtacctctagagagcagcgaggagaagcta
gtgagtaaatttgacaagcttccagtgaaggtggtgcagaagaacgaccccttcgtggtg
gattactcggacaagctggggcgggtgcaggagttcgacagcgggctcctgcactggcgc
atcggcggcggcgacaccaccgagcacatccagacacacttcgagagcaagagcgagctg
cccttgcctcacaaacgagcttcctgctcctctgccctgaggaaacgctcagcagccgag
agcgccccgagccccagggaaggggaggcccccgctcccgacggctcttcggagaagagg
ataacggccaccatggacgacatgctgtccgcgcgcccgggctccctggcaggggacgag
gaggaggtcaaggcttcggaaacggcgaaggagagcagcaagtttccctttgtcatcagc
ccagctcagagccacagaaatataaaaatcctggaggatgaaccccacagtaaggacgag
acgccgctctgcaccctcctggactggcaggactctctggccaagcgctgcatctgcgtc
tccaacatcatcaggagtttatcgtttgtgccaggcaatgactttgaaatgtccaaacac
cccgggctgctgctgattttagggaaactgatcctcctacaccacaagcatccagaacgc
aaacaggcccccctgacctacgagaaggaggaggagcaggaccaaggggtgagctgcaac
aaggtggagtggtggtgggactgtttggagatgctgcgtgaaaacacactggtcacgttg
gccaacatttctgggcagctggacctctccccttacccggaaagcatctgtttgcctatc
ctggatggactcctccactgggcagtgtgtccctcagcagaggcccaggatcccttcccg
acactggggcccaacgctgtcctctcccctcagagactggttttggaaacactcagcaaa
ctcagcatccaggacaacaacgtggatttgatcctcgccacgccgcccttcagccgcttg
gagaagctgtacagcaccatggtgcggttcctcagtgacagaaagaacccggtgtgccgg
gagatggccgtggtgctgctggccaacctggcacagggggacagcctggccgccagagcc
atcgccgtgcagaagggcagcatcggcaacctgctgggcttcctggaggacagcctggct
gccacgcagttccagcagagccaggcggggctgatgcacatgcagagccctcccttcgag
gccaccagcgtggacatgatgcgccgcgccgcccgcgcgctgctggccctggccaaggtg
gacgagaaccactcggagttcaccttgtacgagtcgcggctcttggacatctccgtgtcg
cctttgatgaactctttggtttcacaagttatttgtgatgtactgtttttaattggccag
tcatga
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integrated database retrieval system
