Ficedula albicollis (collared flycatcher): 101815266
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Entry
101815266 CDS
T02815
Symbol
UPF3B
Name
(RefSeq) UPF3 regulator of nonsense transcripts homolog B (yeast)
KO
K14328
regulator of nonsense transcripts 3
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03013
Nucleocytoplasmic transport
fab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101815266 (UPF3B)
03015 mRNA surveillance pathway
101815266 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101815266 (UPF3B)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101815266 (UPF3B)
mRNA cycle factors
P-body specific factors
101815266 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
101815266
NCBI-ProteinID:
XP_016153714
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Position
4A:complement(9506038..9513571)
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AA seq
629 aa
AA seq
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MPGMLRQAPMMAMPGRISYHIPPVPVPVPVLVPLPLRRVPGHSRPAPRLSRPAPRPSQPS
GPERAAGATALPGNSPVPRNAFHLARYRSRSRSRPLTPPGSAVAGAVHAGSGSPAEAAAP
LRDSLARGGGHWVRAVLPGPGVRIGIRMKEDKENARPKERRGASSGLGVLLAAGPGTGPA
AGTDVRAGAAELDRLERPKDKKETLSKVVIRRLPPSLTKEQLEEHLQPLPEHDYFEFFAN
DSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSK
KKDAKTGTIEDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKELIAKKTTPLLNFLK
NKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEKLKKVDRCPEKERDRSK
EEPKIKLLKKPEKDEKDLERKEKSKKLEKDTLREEKNASSASAKRSDGETKEEKAKKSED
ECVKDYRDRDRDFDRDREYERAQREKLRRQEEERRRQKERYEKEKVFRRKEEEVKKERDL
LREKGKKSDLTDFTSSMDKSEKVTKDDKKEDTIKRDRIRNKDRPAMQLYQPGARSRSRLC
QYEDSAAKPPDQGVDKKQEGETSHTKEEE
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgccggggatgctgaggcaggcgcccatgatggccatgccgggcaggatctcgtaccac
atcccgccggtgccggtgccggtgccggtgctggtgccgctgcctctgcgccgagtgccg
gggcactcccggcctgccccgcgcctttcccggcctgccccgcgcccctcacagcccagc
gggcccgagcgggcagcgggagcgacagcgctgccgggaaacagtcccgtgccaagaaat
gcgttccacttggcccgataccgctctcggtcccggtcccggccgctgaccccaccggga
tcagccgtggcgggcgcggtgcacgctgggagtggtagtccggcggaggcagcggcacct
ttaagggacagtctcgcgagaggcggcggtcattgggtgcgcgcggtgctgcccgggccc
ggagtcaggatcgggatcaggatgaaggaggacaaggagaacgccaggcccaaggagcgg
cgcggggcttcctccgggctgggggttctgctggccgcggggccaggcacgggccccgcc
gccggcacggacgttagagccggcgctgccgagctcgatcgcctggagcggcccaaggac
aagaaggagacgctcagcaaggtggtgatccgccggctgccgcccagcctgacgaaggag
cagctggaggagcatttgcagcctctgcccgagcacgactacttcgaattcttcgcgaac
gactccagcttgtacccccacatgttctcgagagcctacatcaacttcaagaaccaggaa
gacatagtcctcttcagggatcgtttcgacggctacgtttttgtcgatcacaaaggtcag
gaatatgctgccatagttgagtttgcacctttccaaaaagctgcaaaaaagaagagtaag
aaaaaggatgccaaaactggaacaattgaagatgatccagaatacaagaagtttttggaa
agttacagtgcagatgatgaaaaattaacctccactcctgaaactttgttggaggaaata
gaggcaagaaacaaagagctaatagctaaaaagactactcctttattgaacttcttgaaa
aataaacagagactgagagaagaaaaaagagaggagagaaggaggagagaattagaaaga
aaaagacaaagagaagaagaaagaagaaaatggaaagaagaggagagaaggaagagaaaa
gaagcagaaaaattgaagaaagtagacagatgcccagaaaaagaaagagacagatcaaaa
gaagaaccaaagattaagctacttaagaagcctgaaaaagatgaaaaagacttggagaga
aaagaaaaatccaagaaactggaaaaagacactctgagggaggaaaaaaatgcgagtagt
gcatctgccaaacgatctgatggggagacaaaagaagagaaggcaaaaaaatcagaagat
gagtgtgtaaaggactacagggaccgagatagagattttgacagagacagagaatatgag
agagcacagagagagaaactgaggcgccaagaagaggagcgtcggaggcagaaagagcgc
tatgagaaggagaaggtttttagaagaaaagaagaggaggtgaaaaaggagagagactta
ctcagagaaaagggaaagaaaagtgatcttacggactttaccagcagcatggacaaatct
gagaaagtaaccaaagatgataagaaagaggatacaattaagagagatcgtatcagaaac
aaggatcgcccagcaatgcagctgtaccagcccggagcccgaagccggagcagattgtgt
cagtatgaagacagtgctgcaaaacccccagatcagggagtggataagaaacaagagggt
gagaccagtcacacgaaggaagaggagtga
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