Ficedula albicollis (collared flycatcher): 101815423
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Entry
101815423 CDS
T02815
Symbol
PBRM1
Name
(RefSeq) polybromo 1
KO
K11757
protein polybromo-1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101815423 (PBRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fab03021
]
101815423 (PBRM1)
03036 Chromosome and associated proteins [BR:
fab03036
]
101815423 (PBRM1)
Transcription machinery [BR:
fab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101815423 (PBRM1)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
101815423 (PBRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
101815423
NCBI-ProteinID:
XP_005053160
LinkDB
All DBs
Position
12:5961868..6014993
Genome browser
AA seq
1655 aa
AA seq
DB search
MRRLAFRGAGSTLKKLDSMGSKRRRATSPSSSVSGGDFDDAHHSTNIPGPSRKRRRLSNL
PTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKL
KMEEYDDVNVLTADFQLLFNNAKAYYKPDSPEYKAACKLWELYLRTKNEFVQKGDAEEDD
DDEEGHDNQANSELSSPGYLKEILEQLLEAVAVATNPSGRLISELFQKLPSKVQYPDYYA
IIKEPIDLKTIAQRIQNGTYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANAIKKIFNM
KKAEIEHSELAKSSLRIRTASNLAASKLTGPSSQGKGSVGDERNSSNKYYRNKRSAQGDR
LSAITMALQYGSESDEDAALAAAARYEEGESEAESITSFMDTSNPLYQLYDTVRSCRNNQ
GQLISEPFFHLPSKKKYPDYYQQIKTPISLQQIRTKLKNHEYETLDQLEADLNLMFENAK
RYNVPNSAIYKRVLKMQQVMQAKKKELARRDDIEDGDSMISSATSDTGSSKRKSKKNIRK
QRMKILYNAVLEAREPGTGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKMIEHNIRNDKY
VAEEAMIEDMKLMFRNARHYNEEGSQVYNDAHMLEKILKEKRKELGPLAEDDDVASPKLK
LSRKSGISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYVTI
KKPVDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETR
REIEGDEDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNKPPL
TFDIIRKNVENNRYRRLDLFQENMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELC
KNGEILLSPALSYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGSAGL
SSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYR
PNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCE
SRYSAKTKSFKKIKLWTMPVSSVRFVPRDVPLPVVRVASVFANTDKVDEEKHSETLEDSK
VGESILHLEKDKEDVPVEMSNGEPGCHYFEQLCYNDMWLKVGDCVFIKSHGLVRPRVGRI
EKMWVRDGAAYFFGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCVVLSFK
DFLSCRPTEISENDVFLCESRYNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIVPQK
EPSPLLEKKIQQLEAKFAELEGGDEDMEEMGEEEGDMTETPSMPQLQAPLASDLDIMPYT
PPQSTPKSVKGSTKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRN
LEATKKAEYEGMISGYPPVLPPLQGPVDGIVSMGSMQPLHPGVPPPHQLPPGMPGIPGIP
PPGVIGQNVSPMVGTPAPGASPFGQQIGILGPPGQQAPPPYPGQSPASQPVMQQPSTPMF
VSPPPKTQRLLHSEAYLKYIEGLSAESNSISKWDQTLAARRRDVHLSKEQESRLPSHWLK
SKGAHTTMADALWRLRDLMLRDTLNIRQAYNLENV
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgaggagattggcttttcgaggtgctggttctactctgaagaagttggattccatgggt
tccaagaggcgaagagctacctctccttccagcagcgtcagcggcggagacttcgacgat
gctcatcactccaccaatattccaggcccaagcaggaagaggaggagactttccaatctc
ccaactgtagatcctattgctgtctgccatgagctctacaacaccatcagagactacaaa
gatgagcagggcaggctcctttgtgagctcttcatcagggcacccaagagaagaaatcag
ccagattattatgaagtggtttctcagccaattgatttaatgaaaatccaacaaaagctg
aagatggaggaatatgatgatgtgaatgtgctgactgctgatttccagcttctctttaac
aatgcaaaggcttactataagccagattctcctgaatataaagctgcctgcaaactatgg
gagctgtatttgcgcacaaaaaatgaatttgttcagaaaggtgatgctgaggaggatgat
gatgatgaggaagggcatgacaatcaagcaaattctgaattatcatctccaggttacctg
aaggaaattctggaacagcttcttgaagctgtagctgttgccacaaacccctcaggacgc
ctcataagtgaactgtttcagaaacttccttctaaagtgcaatatccagattattatgca
ataataaaggaacccatagatcttaaaactattgcccaaaggatacagaatggaacttac
aaaagcattcatgccatggccaaggacatagatcttctggcaaagaatgccaaaacctac
aatgagcctggatcccaagtattcaaggatgcaaatgcaattaaaaagatatttaatatg
aaaaaggctgagattgaacacagtgagttggccaagtcaagtctccgaatcaggactgca
tcaaatttggctgcttccaagctgacaggtccttcctcacagggtaaaggcagtgttggg
gatgagagaaattcttctaacaaatattaccgtaacaaaagatcagcccaaggggatcgt
ttatcagcaataaccatggcattgcaatatggatcagaaagcgatgaggatgcagctttg
gctgctgctgctcgttatgaagagggggagtctgaagctgagagcattacctccttcatg
gacacttctaatcctctttaccagctttatgacacagttagaagttgccgaaataaccag
ggccagctcatctcagaaccttttttccacttgccctccaagaaaaagtatcctgattat
tatcagcagattaaaacacccatttcattgcagcagatcagaaccaagctgaagaatcat
gagtatgaaactttagaccagttggaggctgatctgaatttgatgtttgaaaatgccaag
cgctacaatgtccccaattctgccatctataaaagagtgctgaaaatgcagcaggtcatg
caggcaaagaagaaggagcttgctaggagagatgacattgaggatggggacagcatgatt
tcttctgctacatctgatactggaagctcaaaaaggaaaagtaaaaagaacatacggaag
cagcggatgaagatcttgtacaatgctgttctggaagctcgagagcccggcacaggcagg
aggctctgtgatctgttcatggttaaaccatccaaaaaggactatccagactattacaaa
atcatcctggagccaatggacttgaagatgatcgagcacaacatccgcaatgacaagtac
gtggcagaggaggccatgattgaggacatgaagctcatgttccgcaacgccaggcactac
aatgaggagggctcccaggtgtacaatgatgcccatatgctggaaaagatccttaaagaa
aaaaggaaagagctgggacccttggctgaagatgatgatgttgcatcccctaaactaaag
ctaagtaggaagagtggcatttctcccaagaagtccaagtacatgactccgatgcagcag
aagctgaacgaggtgtacgaggcggtgaagaactacacggacaagcgcgggcggcggctg
agcgccatcttcctgcggctgccgtcccgctccgagctccccgactactacgtcaccatc
aagaaacccgtggacatggagaagatcaggagccacatgatggcaaataaataccaggac
atcgactccatggtggaggactttgtcatgatgttcaataatgcttgcacgtacaatgag
ccggagtctttgatttataaagatgccttggtcctccacaaggttttgcttgaaactcgg
agagaaatagaaggagatgaggattctcatgtacccaatgtcactttgctgattcaggaa
cttatccataacctctttgtatctgttatgagccaccaggatgatgagggcagatgctac
agcgactccttagctgagattcctgctgttgatcccaacttcccaaataaacctcctctg
acttttgatattatccgaaaaaatgttgaaaataatcgctacagaagattggacttgttc
caggagaacatgtttgaggtactggagagagcacggagaatgaacaggactgattcagag
atctatgaggatgcagtggaacttcagcagttcttcattaaaattcgagatgaactgtgt
aaaaatggagagattctgctgtcacctgctctcagctacaccaccaagcatcttcacaat
gatgtagaaaaggaaaagaaggaaaagctgcccaaagaaatagaagaggataagctcaaa
agggaggaggagaagagagaagctgaaaagagcgaagattcctctggatcagctgggctg
tcaagtttgcatcggacctacagccaggactgcagcttcaagaacagcatgtaccatgtg
ggggattatgtgtatgtggagcctgcagaggccaacctgcagcctcacattgtctgcatt
gagaggctgtgggaagattcagctggagagaagtggctctatggctgctggttttatcga
ccaaatgaaacttttcatcttgcaacacgaaaattcctggagaaagaagtttttaaaagt
gattattacaataaagttcctgttagcaaaattttaggcaaatgtgtggtcatgtttgtc
aaggaatattttaaattgtgccctgaaaacttcagagatgaggatgtctacgtttgcgag
tcgcgctattctgcgaagacaaagtcttttaaaaagattaaattgtggactatgcctgtg
agctctgtcagatttgtcccacgagatgttcccctgcctgtggtcagagtggcttctgtg
tttgccaatacagacaaagtagatgaggagaaacacagtgaaacactggaggacagtaag
gtgggagaaagtatccttcatcttgaaaaggacaaagaagatgttccagtagaaatgtcc
aatggggaacctggttgccattactttgagcagctctgctacaatgacatgtggctgaaa
gttggggactgtgtcttcataaaatctcacgggttggtgcggcctcgtgtaggaagaatt
gagaagatgtgggtacgagatggagctgcatatttctttggtccaatctttatacatcct
gaagaaactgagcatgagccaacgaaaatgttctacaagaaggaagtgtttttgagtaac
ttggaagaaacctgtcccatgacttgcattttgggaaagtgtgtcgttctgtcattcaaa
gacttcctctcctgcagaccaacagaaatctccgaaaatgatgtttttctttgcgagagc
cgctacaatgaaagcgacaaacaaatgaagaaattcaaggggttgaagaggttttcactg
tctgcaaaagttgtagatgatgaaatatactattttagaaaacccatagttcctcagaag
gagccatctcctctactggaaaagaagattcagcagctggaagcaaaatttgctgagttg
gaaggaggtgatgaggacatggaagagatgggagaagaggaaggtgatatgactgaaaca
ccttctatgcctcagcttcaggcccccttagccagtgatttggatataatgccttatact
ccaccacagtccactcccaagtctgttaagggcagcaccaagaaggagggatcaaaaagg
aagatcaacatgagtgggtacatcttgtttagcagcgagatgagagctgtgattaaagct
cagcaccctgactactcctttggagagctcagcagacttgtaggaactgaatggagaaac
ttggaagcaacaaaaaaagcagaatatgaaggcatgataagtggctatccaccggtgctg
ccacctttgcagggcccagttgatggcattgttagcatgggcagcatgcagccacttcac
ccaggggtgccaccaccccaccaactcccgccaggtatgccaggcatcccaggcatccca
ccacccggtgttataggccaaaatgtgtcccccatggtaggcactccagcaccaggagca
agtccttttggacagcagatcgggatcctgggcccgccgggccagcaggcgcccccgccg
taccccgggcagagccctgccagccagcccgtgatgcagcagcccagcacccccatgttt
gtctcccctccaccaaagacacagaggctcctccattctgaagcctacctgaaatacatc
gaggggctcagtgccgagtcaaacagtatcagcaagtgggaccagacccttgcagcgcgg
aggcgagatgtgcacttgtccaaggagcaggagagccggctgccctcgcactggctgaag
agcaaaggggctcacaccaccatggccgacgcgctgtggcgcctgcgggacctgatgctg
cgggacacgctgaacatccgccaggcctacaacctggagaacgtgtag
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