Ficedula albicollis (collared flycatcher): 101815556
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Entry
101815556 CDS
T02815
Symbol
COL20A1
Name
(RefSeq) collagen type XX alpha 1 chain
KO
K24357
collagen type XX alpha
Organism
fab
Ficedula albicollis (collared flycatcher)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
NDNF
DUF4998
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
101815556
NCBI-ProteinID:
XP_016158647
LinkDB
All DBs
Position
20:complement(9281431..9341108)
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AA seq
1510 aa
AA seq
DB search
MAGASGKWCVLNRPLFSRLWKYHLLLSPHSFPGVLVTMLVHTWLFLACLPVVSHVWGRVG
QGSGRLKLTVLAEDRLQMKWKETEGNISGYKIRVKPMAGDSEQEVMLKTKTPKATVGGLS
PTKEYTLQVYVLNGSQEALFAKRKFVIEELKNASQTRNNRRNAGAASGKNLTSSGSWAAE
HSGGAEASPPALDTALSQTAKDRAEKKRQKGIQPKSSGETTRNQPSVEASVTEITSTTLK
SSPHTAAKVEQEPAGKEKPPKDSLRRGSQFQCDTPAVIDIVLLVDGSWSIGRNNFKLIKE
FLSNLISPFSIAEDKIRVGLSQYSSDPRTEWDLSAFSTREQLLEAMRNLRYKGGNTFTGL
ALTHVLEQNLKPEAGARLEAEKLVILLTDGKSQDDANLAAQTLKNLGIEIFAIGVKNADE
AELRQVASEPLELTVYNVLDFPLLSSLVGKLTRVLCARIKERSHKETTGSTVKDTPVNTG
PQLSPSDLKISAVTSKSMHLAWSPPVRPPKKYRVVYYPSKGGTPKEVAVEGAESSVQLSN
LTSHTEYLVSVIPVYDSAPGDGLRGVTSTLPLSSPRSLRVSELSHNSLRLSWKAAQGATH
YLVLCSAAPDAAEDYTTEVKVTQPEVLLEGLSPSTGYSVAVYAMYGEEASDPASIQETTL
ALSPPRYLSFSELSHASVRVSWPPPPPAVRAHRLTYVSSRGGGAAQVEVPGTATSTVLRP
LSSLTQYFISVRSTYDEGDSFPITGNVTTLKVPPPRALKVTELSGSSLRLQWEAVAAADV
VVYQIKWSTASGEKPQELSLAGNVATAVLPGLQKNTDYKISIWAYYKDGARSDTVSVHHR
TNSRSPPTNLFIDSETPSSLQVHWTPPDGRVQHYKITYSPVSDAAAQQTIMAAGKSSSVT
LQSLLPDRAYRVTISAIHYTGESESTATTGRTAPVLSKFPSIRGFIPPKTEACPSITSTE
GSIRGFDMMEVFGLVEKEYSSIKGVAMEPFVFSGSRIFTLFRDIQLTQRTSDVHLFSIPP
EHTILILLRLLPDTPREPFAVWQVTDEDFQPLLGVNLDPSKKSLTYFNHDYKADLQEVSF
DQQEVKKIFYGSFHKVHVAVSHFKVKLYVDCKKIAEKSINTLGSISTAGFIMLGKVTRTR
GPRSGSVPFQLQSLQILCSSVGAEQDRCCDLPALRDEDTCPTLAPACSCTSGRPGLPGPP
GPPGSPGRRGPQGEQGEPGPKGEPGPPGQVGPAGPSGQQGSPGSQGITVQGPVGPPGIKG
EKGDIGIPGMQGIPGVQGAPGRDGLQGAKGVRGLEGTAGPPGPPGPRGFQGATGTRGSSG
EKGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVSQACERMIQTHVLKFDSFIHEHAR
KPVPIWEERLKPGEPGPPGPPGPPGSSGERGENGTPGQPGKDGYPGERGAPGPKGEKGMA
GASEEGSQGPRGRTGPPGEVVQGKPGPKGFPGSAGPPGFPGARGQPGQPGHPGGCDFSGC
YEADRRDFVP
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atggctggagcaagtggaaagtggtgtgttcttaacagacccctattttccaggctctgg
aaataccacttgctgctgtctccacattccttccctggggtcctggtcacaatgctggtt
cacacttggctctttcttgcctgcctgcctgtggtgagccatgtctggggacgagtgggc
caagggtcgggccggctgaaactcactgtccttgcagaagacaggctccagatgaagtgg
aaagagactgaagggaacatcagcggctacaaaattcgggtaaagcccatggcaggggac
tcggagcaagaagtcatgctgaaaaccaagactcccaaagccacagtgggagggctgagc
cccaccaaggaatacaccctgcaggtctacgtgctcaatggctcccaggaagccctgttt
gccaagaggaaatttgtgatagaggagctcaaaaatgcatcgcagactaggaataaccgg
aggaacgcaggagctgcatcaggaaagaacctcacctcctcggggagctgggcagctgag
cacagtgggggggcagaggcctcccccccagccctggacactgccctgtcacagacagca
aaggacagagctgaaaagaaaaggcagaaggggattcagccaaagagctcaggtgaaaca
acaagaaaccagcccagtgtggaggccagtgtgacagaaataacatcaacaaccctgaaa
tcatccccacacactgctgcaaaggtggagcaagagcctgcaggaaaagaaaaaccccca
aaggattccctgaggcgaggctcccagtttcagtgtgacacacctgcagtgattgatatt
gtcctgcttgtggatgggtcctggagcatcgggcgcaacaatttcaagctcattaaggag
ttcctgagtaatttaatttccccattcagcattgcagaagacaagataagagtagggctg
tcccagtacagcagtgacccccgcaccgagtgggatctgagcgctttctccacgagggag
cagctgctggaggccatgaggaatctgcggtacaagggtggcaacacctttacaggtcta
gcactcacccacgtcctggagcagaatctgaaaccagaggctggtgcccggctggaggct
gagaagttggtaatcctcctgactgatgggaaatcccaggatgatgccaacctggctgct
cagaccttgaaaaacctgggcatagagatatttgccattggggtgaagaacgcggacgag
gcggagctgaggcaggtggcctcggagccgctggagctcaccgtctacaacgtgctggac
ttccccctgctcagctccctggtgggcaaactcacacgggtcctgtgcgccaggatcaag
gagaggagccacaaggaaaccacaggcagcactgtgaaagacacccctgtaaacacaggt
ccccagctcagcccatctgacctgaaaatatctgctgtgacctccaagagcatgcacttg
gcctggagccctcctgtgagaccaccaaagaaatacagggttgtgtattacccatccaag
ggggggacccccaaagaggtggctgtggagggagcagagtcctccgtgcagctgtccaac
ctgacctcgcacacggagtacctggtgtcggtgatcccggtgtacgacagcgccccgggg
gacgggctcaggggcgtcacctccacactgcctttgtcttcccctcgctccctgcgtgtc
tctgagctgagccacaacagcctgaggctgagctggaaagcagcccagggagccacacac
tacctggtgctctgctctgcagcccctgatgcagcagaggactatacaacagaggtgaag
gtgacccagcccgaggtgctgctggaggggctgtcccccagcactgggtactctgtggca
gtgtatgccatgtatggggaagaagccagtgatccagccagcatccaggaaaccaccttg
gccctgagccccccccggtacctgagcttctcggagctgagccacgcgtccgtgcgggtg
agctggcccccccccccgccggccgtgcgcgcccaccgcctcacctacgtctccagcaga
gggggcggcgctgcccaggtggaagttcctggcactgcaacatccactgtcctgagacct
ctgtcctccctcacacaatacttcatcagtgtcagatctacatacgatgaaggggactcc
tttccaattactggcaatgtcaccaccttgaaggtgccccctccccgtgctctgaaggtc
acggagctctctgggagcagcctccgcctgcagtgggaagctgtcgccgccgcggatgtg
gtggtctatcagatcaagtggagcacagccagtggagagaagcctcaggagctctccctc
gctggaaacgtggccacagctgtcctgcccggcctgcagaagaacactgactacaaaata
tccatctgggcctactacaaagatggggctcggagtgacaccgtgtctgttcaccacagg
accaattcccggagcccacccaccaacctcttcatcgactccgagacccccagcagcctc
caggtgcactggacccctcctgatggccgtgttcagcactacaaaatcacctacagccct
gtttctgatgctgctgcccagcaaactatcatggctgctggcaaaagcagcagtgtgacc
ctgcagtccctgctgcctgaccgagcctacagggtgaccatttctgccatccactacacg
ggagagagcgagagcacagccaccacgggacggacagctcctgtgctgtccaaattccct
tccatccgaggattcatcccacctaaaacagaggcctgccccagcatcacctccacggaa
ggttccataagaggatttgatatgatggaagtttttggcttggtagagaaggaatattcc
tccattaaaggcgtagccatggagccctttgtattcagtggttcccgcattttcaccctg
ttcagggacattcagctcacccagaggaccagtgacgtccacctgttctccatcccaccc
gagcacaccatcctcatcctcctgcgcctcctgcccgacacccccagggagccctttgct
gtgtggcaggtcacggatgaggacttccagcccctcctgggtgttaaccttgaccccagt
aagaaatccttgacttatttcaatcatgactacaaggctgatttacaggaagtctccttt
gaccagcaggaagtgaagaagatattctatgggagctttcataaggtgcacgtggctgtg
agccacttcaaggtcaagctctatgtggactgtaagaaaatagcagagaaatccatcaac
accctcggcagcatctccaccgccggcttcatcatgctgggaaaagtgacccggaccagg
ggcccccggagcggctccgtgcctttccagctgcagtctctgcagatcctgtgcagcagt
gtgggggcagagcaggacagatgctgtgatcttcctgcactgagggatgaggacacctgc
cctaccttggctcctgcctgttcttgcacttctgggcgcccaggcttgccaggaccccca
gggccccctggcagccctgggaggagaggacctcagggggagcagggggagccaggaccc
aagggtgaaccaggcccacctggacaagtaggaccagcaggtcccagtggccagcaaggc
tctccagggtcccaagggatcacagttcagggccctgtggggccaccaggaattaaagga
gagaaaggagacatcggaatccctggcatgcagggcattcctggtgtgcagggagctcca
ggcagggatggacttcaaggtgcaaagggggtgaggggactagaaggcacagctgggcct
ccaggacctcctggaccaaggggtttccaaggagccacaggcacccgaggcagcagtggt
gagaagggacctccaggagatgttgggccaacagggctgccaggtcccaaaggagaaaga
ggagagaaaggggaaccacagtctttggccacaatttaccagctcgttagccaggcttgt
gagaggatgattcagactcatgtgttgaaatttgattcattcatacatgaacatgcaagg
aagccagttcccatctgggaggaaaggttaaaaccaggagaaccaggaccaccaggtcct
ccaggcccacctgggagcagtggagaaagaggagaaaatggcactcctggacagccaggc
aaagatgggtatccaggagagagaggtgccccagggcccaaaggagagaaagggatggct
ggagccagtgaggaagggagccaaggacccagaggaagaacaggccccccaggagaggtt
gtgcaggggaaaccaggtcccaagggtttccctgggagtgctggtcctccaggtttccct
ggtgccagagggcagcctgggcagcctggacatccagggggctgtgatttctctggatgt
tatgaggctgatagaagagattttgtcccctga
DBGET
integrated database retrieval system
