Ficedula albicollis (collared flycatcher): 101815603
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Entry
101815603 CDS
T02815
Symbol
COL3A1
Name
(RefSeq) collagen type III alpha 1 chain
KO
K19720
collagen type III alpha
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101815603 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101815603 (COL3A1)
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101815603 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
101815603
NCBI-ProteinID:
XP_005049335
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All DBs
Position
7:7083409..7133071
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AA seq
1424 aa
AA seq
DB search
MMSSVQKVTLLILAVFQPSVILAQQVVTGCTHLGQAYADRDVWKPEPCQICVCDAGSVLC
DDIICDDQELDCPNPEIPFGECCPVCPQTTTPPPRTPEVISRGPKGDPGSPGVPGRNGPP
GPPGQPGSPGAPGPPGICQSCPSFNGGSFSPQYDSYDVKAGGAGIGYPQPISGFPGPPGP
SGPPGPPGHAGPPGSAGYQGSPGEPGQPGPPGPPGPVGMIGPVGPPGKDGEPGRPGRNGD
RGIPGLPGHKGHPGMPGMPGMKGQRGFDGKDGAKGDSGAPGPKGETGLPGVNGAPGQPGP
RGPAGERGRPGNPGGPGAHGKDGSPGAAGPPGPPGPPGTAGFPGSPGFKGEAGPPGPAGA
SGSPGERGEPGPQGHAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGA
SGNPGAKGSPGDPGKDGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGT
PGERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGERGQDGGPGLPGMRGLPGI
PGSPGSDGKPGPPGNQGESGRSGPPGPPGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGP
PGPPGLAGKNGDVGLPGPPGPTGASGERGEPGAAGPPGLQGLPGGPGPAGENGKPGEPGP
KGDIGGPGFPGPKGENGIPGERGAQGPPGPPGTRGGPGPAGTEGAKGPPGPPGPPGGTGL
PGLQGMPGERGASGSPGPKGERGEPGGKGADGLPGARGERGNVGPIGPPGPAGPPGDKGE
TGPAGAPGPMGSRGSPGERGEQGLPGPAGFPGAPGPPGPQGIKGDRGSPGGPGAAGFPGA
RGLPGPPGNNGSPGPPGNAGPAGKDGPPGPPGSSGAPGGPGPAGIRGEPGAPGEKGPPGA
RGERGAPGEPGPQGIVGGRGNTGLPGLRGPSGPPGMAGAKGEDGKPGTNGIPGERGAPGP
QGPIGQRGLPGEPGRDGNPGSDGLPGRDGSPGGKGDRGESGSPGPPGPPGHPGPAGNAGA
PGKSGERGFQGPPGPPGSTGPAGARGPAGPQGPRGDKGEPGERGSNGIKGHRGFPGTPGL
PGPPGPLGPQGAIGGPGASGARGPPGPAGPPGKDGTSGYPGPIGPPGPRGTRGESGPAGP
PGQPGLPGPAGPPGPCCGGGVAALGAGEKGPISYGYEYRDEPKENDINLSDIISTMKSIN
NQIENIVSPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKVYCNMETGETC
LNANPRTVPKKNWWTSANSGKKHIWFGESMNGGFQFSYGDPELPEDVSEVQLAFLRILSS
RASQNITYHCKNSIAYMDHDSGNVKKALKLMSSTESEIKAEGNSKFTYAVLEDGCTKHTG
EWGKTVFEYRTRKTMRLPVVDIAPLDIGGPDQEFGVDIGPVCFL
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctctgtgcaaaaagtaactttgctcattcttgccgtgtttcaaccctcagtt
attttggcacaacaagtcgtcacaggatgtacccatcttgggcaggcttatgctgacagg
gatgtttggaaaccagagccatgccaaatctgtgtgtgcgacgcgggatctgttctctgt
gatgacatcatctgtgatgaccaggagctggactgccccaacccagagattccttttgga
gagtgctgtccagtttgtccacagacaacaacaccacctccaagaactcctgaagtaatc
agccgaggccccaaaggagaccctggttctcctggagttccaggcagaaatggtccccct
ggcccaccaggacagccagggagccccggagcccccggcccccctggaatctgccagtcg
tgtcccagtttcaatggaggtagtttttctccacagtatgactcctatgatgtgaaggct
ggtggagctggtatcgggtacccacaacccattagtggctttccaggaccccctggcccc
agtggcccccctggcccacctggtcatgcaggtccccctggctctgctggataccagggc
tcccctggagaaccaggacaacctggccctcccggacctccaggccctgttggaatgata
ggcccagttggtccaccaggaaaagatggagaaccaggaagaccaggcaggaatggagat
cgtggaatccctggattaccgggtcataagggacaccctggaatgcctgggatgcctggg
atgaaaggccagcgaggttttgatggaaaagatggtgccaaaggtgacagtggtgctcct
ggtccaaagggtgaaactggtcttcctggagtgaatggagcaccaggccaaccgggacca
agaggtccagctggagaaagaggaaggcctgggaatcctggtggccctggtgcccacggc
aaagacggatctccaggagcagcaggccctcctggtcccccaggtccccctggaactgca
ggatttccaggctctccaggttttaagggtgaagctggtcctcctggtcctgctggtgct
agtggaagtcctggagagagaggagaacctggtcctcagggtcatgctgggccacctggg
cctcagggccctcctggaagagctggaagccctggcaacaagggtgaaatgggaccttct
ggtattcctggtgctcctggtcttccaggaggccgtggccttccaggtcctccaggtgca
agtggaaaccctggggcaaaaggcagtccaggagatcctggtaaggatggtgcaaaagga
gatcccggcccaaaaggcgaacgtggtgaaaatggcaccccaggtgctcctgggcctcct
ggtgaggaagggaaaagaggtgcaaatggtgaacccgggcagaacggagtacctggtacc
cctggagaaaggggctcccctggcttccgcggcttgcccggcagcaatggacttccaggt
gaaaagggccctgcaggtgagcgtggcagcccaggtccccccggccccagcggacccgcg
ggagagcgtggacaagacggaggcccaggtcttcctggaatgagaggcttgcccggaatt
ccaggaagccctggaagtgatgggaaacctggcccccccggcaatcagggtgaatctggg
cgctctggcccacctggccctccaggcccacgaggccagccaggtgtgatgggtttccct
ggtcctaagggcaatgagggtgcaccaggcaagaatggagaaagaggccctggtggacca
cctggaccacctggtcttgctgggaagaatggtgatgttggccttccaggtcctccagga
cctactggtgcttctggggagagaggagaaccaggagcagcaggcccacctggcctccag
ggattgcctgggggaccaggaccagctggagagaacggaaagcctggagaaccagggcca
aaaggtgatattggaggacctggattcccaggccctaagggtgaaaatggtatcccagga
gaacgtggtgcacaaggtcctccaggacctcctggaacaagaggtggaccaggtcctgct
ggtacagaaggtgccaagggtccccctggcccacctggtccccctggcggcacaggactg
cctggcttacagggaatgccaggagaaagaggagcttctggaagccctggaccaaaaggg
gagaggggagaacctggtggtaaaggtgctgacggccttcctggtgcaagaggagagaga
ggcaacgtaggtcccattggtcctcctggtcctgctggcccacctggagataagggagag
actggcccagcaggtgcccctggccccatgggttcccgtggaagtcctggtgaacgagga
gagcaaggtcttcctgggcctgctggcttccctggagccccaggtccacctggtccccaa
ggaataaaaggcgaccgtggatctcctggtgggcctggtgctgctggtttccctggtgct
cgtggtctacctggtccccctggtaacaatggcagtccaggtccccctggtaacgcaggg
cccgcaggcaaggacgggcctcccggcccccccggcagttctggtgctcctggaggtccc
ggacctgctggaatcaggggtgagcctggcgccccaggagaaaaagggcccccaggagca
cgaggagagaggggggcaccgggtgagccaggccctcaaggcatcgtcggcggccggggg
aacacggggctgccaggcctgcgtggccccagtggcccacctgggatggcaggggccaag
ggtgaagatggtaaaccaggcaccaacggtatcccaggagaacggggtgctcctggtccc
caaggtcccattggccaaagaggcttacctggagagcctggcagagatggtaaccctggc
tctgatggcttgcctggacgtgatggatccccaggaggcaaaggtgaccgtggtgaaagt
ggctctcctggccctccaggaccccctggccaccctggacctgcaggcaatgctggtgca
cctggaaaatctggtgaaagaggatttcagggtccacctggccctcctggctccactggt
cctgctggtgctcgtggtcctgccggtcctcaaggtcctcgtggtgataagggtgaacct
ggtgaacgaggcagcaatggcataaaggggcacagagggtttcctggtacccctggtctc
cctggtcctcctggtcccctgggtccacaaggtgcaattggaggtccaggagcttcaggt
gcaaggggacccccaggaccagctgggccacctggaaaagatggtaccagtggctaccca
ggtccaattggtcctcctggcccccgtggtaccagaggtgaaagcggccctgctggtcca
ccagggcagcctggtcttcctggtcctgctggtcctcctggcccatgttgtggtggtggt
gtagctgccctgggtgctggtgagaaaggtccaatttcctatgggtatgaatatcgagat
gagcccaaggaaaacgatatcaatctgagtgacatcatatctacaatgaaatcaattaac
aaccagattgaaaacatcgttagtcccgatgggtcccggaagaatccagctcgtaattgc
cgagacctgaaattctgccatcccgagctcaagagtggagagtactgggttgatcctaac
caaggctgcaagatggatgctattaaagtctactgcaatatggaaactggtgagacctgc
ctcaatgctaaccccaggactgtgccaaagaaaaactggtggaccagtgcaaacagtgga
aagaaacacatttggtttggagagtctatgaatggaggcttccagttcagctatggggat
cctgagcttccagaagatgtctccgaggttcagctggccttcctacgcatcctctccagc
cgtgcctcccagaacatcacctaccactgcaagaacagcattgcctacatggaccatgac
agtggcaatgttaaaaaagctctgaaactcatgagctctacagaaagtgagatcaaggct
gaaggaaacagcaaattcacatatgctgttctggaagatggctgcactaaacacactggt
gagtggggtaaaacagttttcgaatacaggacacgcaagacaatgaggttgccggtggtt
gatattgcacctttagatattggtggtcctgatcaggaatttggcgtggacattggccca
gtctgcttcttataa
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