Ficedula albicollis (collared flycatcher): 101816055
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Entry
101816055 CDS
T02815
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03030
DNA replication
fab03410
Base excision repair
fab03420
Nucleotide excision repair
fab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101816055 (RFC1)
03410 Base excision repair
101816055 (RFC1)
03420 Nucleotide excision repair
101816055 (RFC1)
03430 Mismatch repair
101816055 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fab03032
]
101816055 (RFC1)
03400 DNA repair and recombination proteins [BR:
fab03400
]
101816055 (RFC1)
DNA replication proteins [BR:
fab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101816055 (RFC1)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101816055 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
Rad17
BRCT_2
RNA_helicase
AAA_5
AAA_30
RuvB_N
AAA_17
AAA_16
AAA_33
AAA_7
AAA_18
nSTAND3
TIP49
AAA_19
NTPase_1
AAA_28
Motif
Other DBs
NCBI-GeneID:
101816055
NCBI-ProteinID:
XP_016153545
LinkDB
All DBs
Position
4:48598467..48634482
Genome browser
AA seq
1143 aa
AA seq
DB search
MLSLPLMPAGAHEAFLKPSWRDIRKFFPPGKRQGCETVKKSEKIKNGEGPSSGKKREKET
KVNNSPSEDDSKQKRTKKKRRIIYDSDSEEELQSVKKSKKSPEKKAATSKLGKVLKQDPV
VYISETDEDDDFANERISLKPKENGTSSVGCPGANTVTKEAVKPQAKIKPLSPVKQTPTS
ALDFFGTRSVQRSEKKLVASKRKEPSQSRDSTVDDEAIARQLQLEEDSELERQLHEDEEF
ARTLAMLDETSQKKKARKDTGEQTVLSLNSSPNTTAGYKHSERVKAADSTGAAKNYCAKP
QAKSEQLKGSHVSPQSSDGKEEEIAEKERGAQNSLSRGKAASGKEEKTTPKKEKVSPKKA
ESVSPEDSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERD
EAKSLIERYGGKVTGNVSRKTNYLVMGRDCGQSKCEKASTLGTKVIDEDGLFDLIRTMPG
KKSKYELAAETEAKKAESKPKRTPQKAEAGKRNFSPYKREANNKKYKSTPEKGDTNRSVK
KETTAVRKLTDFKCQTAEEKEAPKPKESSVSEDDGDGTEKLLWVDKYKPVSLKAIIGQQG
EQSCANKLLRWLRNWHKNTLEDGQAGSKDDGTGFKAALLSGPPGVGKTTTAALVCKELGY
SYVELNASDTRSKNSLKEVVAESLNNTSIKDFYSGASSSVSGKHVLIMDEVDGMAGNEDR
GGIQELIGLIRHTKIPIICMCNDRNHPKMRSLVHYCLDLRFQKPRLEQIKGAMMSIAFKE
GLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDI
VRKVFATGEEAARMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRA
ADSICDGDIVDRQIRSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTGK
HDRIIQELAMHMSLRTQTCKRTVNLDYLSYLRDALVQPLKDFGADGVQQAVTFMDSYCLM
KEDVDNIMEISTWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLSSVKASKRQSGSAT
TLDLSEDLNVEEIQSDEDEQDTLDSDAMIKQKKVKSSKLPKREKNEETTKKEGKRKEKTR
HLE
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgttatctcttccattaatgccagcaggagcacacgaggcgttcctgaagccgagctgg
agggatatccggaaattctttcctcctggaaagcgacaaggatgtgagactgtgaaaaag
agtgaaaaaattaaaaatggtgaaggaccctcaagtgggaagaaaagagagaaggagact
aaggtgaataattcacccagtgaagatgattccaaacaaaagcggacaaaaaagaagaga
agaataatctatgattcagattcagaagaggagttgcagtcagtgaaaaaatccaagaag
tcacctgagaaaaaagcagctacttcaaaacttggtaaagttctaaagcaggatcctgtt
gtttatatttcagagacagatgaagatgatgattttgccaatgaaagaatttccctgaaa
ccgaaggagaatgggacatcatcggttggttgtccaggagcaaatactgttacaaaagaa
gcagtaaagccacaagctaaaatcaaacccctctcgccagtgaaacagactcccacctct
gcacttgatttttttgggacaaggagtgttcaacgctcagaaaagaaactggtggcaagt
aaaaggaaagagccttcacagagcagagacagcacagtagatgatgaggccattgctagg
caactgcagcttgaagaagattcagagctggagagacagctgcatgaagatgaagaattt
gctagaactctggccatgttggatgaaacatcacagaagaaaaaggctcggaaagataca
ggggagcaaacagtactgagcctcaacagcagccctaacacaacagcgggatataagcac
tcagaaagagtgaaagcagcagactcaactggtgcagccaagaattactgtgcaaagcca
caagcaaaatctgagcagttgaaaggttctcatgtatccccacaatcatctgatggtaaa
gaagaagagatagctgaaaaggaaagaggtgctcaaaattcactatcaagaggaaaagca
gcttcagggaaagaggagaagacaacaccaaagaaggagaaagtttctcccaagaaggct
gagtctgtaagtcctgaggactctgaaaagaagcgaaacaattaccaagcttaccgaagc
ttccttaatcgtgagggtccgaaagcactgggttccaaagagatacctcagggagctgaa
aactgcttggaaggcctgacatttgtgattactggtgttctggagtgtattgagagagat
gaggccaagtctctgattgaacgttacggaggaaaagtaactggcaatgttagcaggaag
acaaattacctggtgatggggcgggactgcggccagtccaaatgtgagaaggcatcaact
ttaggtacaaaagttattgatgaggatggtctgtttgatcttattcgaactatgccaggc
aaaaaatccaaatatgagctggcagctgaaacagaggcaaagaaagcagagtcaaaaccc
aaaaggacaccacagaaagctgaagctggaaaaaggaattttagcccctacaaaagggaa
gctaataataaaaaatacaaatctactcctgaaaagggagataccaacagatctgtcaag
aaagaaaccacagctgttcgaaagcttacggactttaaatgtcagactgcagaggagaaa
gaagccccaaaacctaaggagagctcggtttctgaggatgatggagatggcacagagaaa
ttgctgtgggtagataaatacaagcctgtgtctcttaaggcaattattggacagcagggt
gagcaaagctgtgccaacaaactgctccgatggctcaggaattggcacaagaacaccttg
gaagatggacaagctggaagcaaagatgacgggacaggctttaaagcagcattgctttct
ggtccacctggagttggtaaaactacaacagctgctttggtttgtaaggaactggggtac
agctacgtggagctgaatgccagcgacacgcgcagcaagaacagcctgaaggaagtagtt
gctgaatcactgaacaacaccagcatcaaggacttctattctggtgcatcttcatcagtt
agcgggaaacatgtattgatcatggatgaagtggatggtatggcaggcaatgaagacaga
ggagggattcaggagttgattggtttgatccgacacacaaagatacccatcatttgtatg
tgcaacgatcgcaaccaccccaaaatgcgctccttggtccactactgcttggatcttcgt
tttcagaaacctcgtctagagcagatcaaaggtgccatgatgtctattgcatttaaagaa
ggtttaaaaattcccccacctgctatgcaagagataatcctggcagcaaatcaggacatc
agacaggttttacataatcttaatatgtggtgtgcgaaagacaaatcactgacttacgat
gaagctaaaacagatgccagcagagccaaaaaggacatcaaactgggccctttcgacatt
gtccggaaggttttcgctactggagaggaggctgctcgtatgtctcttatagacaaatca
gatcttttcttccatgattattcactagcacctctctttgtccaagagaactatgtgcat
gtgaaaccagctgctgctggaggtaatttaaaaaagcacttggtgctcttgagtagagca
gctgatagtatatgtgatggtgacatagtggacaggcagattcgtagcaagcagaactgg
aatcttcttccaacacaggccatttatgcaagtgttctcccaggggagctgatgaggggt
tacatgtcccagtttcctgtctttcccagctggctggggaaattttcatccacgggcaaa
catgatcgtatcattcaagaactggcaatgcacatgagtctcagaactcagacatgcaag
aggactgtaaatttggattatttgtcgtatttgcgggatgctcttgtccagcccttgaaa
gactttggagcagatggtgtgcaacaagctgtaacatttatggactcttactgcttgatg
aaagaagatgttgacaatataatggaaataagcacatggggaggcaaacccagtcctttt
tcaaagctggatcccaaggtcaaagcagctttcacacgtgcctacaacaaggaggcacat
ctgactccatattcacttagttctgtcaaggcatctaaaaggcagtcaggatctgcaacg
accttagatctgagtgaagacctgaatgtggaagagatccaatctgatgaggatgagcag
gatactcttgacagtgatgcaatgattaagcaaaaaaaggtgaagtcttccaagctgcca
aaaagagagaaaaatgaagaaacaacgaaaaaagaaggaaaaagaaaagagaaaacaaga
catttagagtaa
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integrated database retrieval system
