Ficedula albicollis (collared flycatcher): 101816243
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Entry
101816243 CDS
T02815
Symbol
SDC1
Name
(RefSeq) syndecan 1
KO
K06257
syndecan 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04512
ECM-receptor interaction
fab04514
Cell adhesion molecule (CAM) interaction
fab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101816243 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
101816243 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101816243 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fab04131
]
101816243 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
fab04090
]
101816243 (SDC1)
00535 Proteoglycans [BR:
fab00535
]
101816243 (SDC1)
Membrane trafficking [BR:
fab04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
101816243 (SDC1)
CD molecules [BR:
fab04090
]
Proteins
101816243 (SDC1)
Proteoglycans [BR:
fab00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
101816243 (SDC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
101816243
NCBI-ProteinID:
XP_016153073
UniProt:
U3JGE2
LinkDB
All DBs
Position
3:complement(106912377..106945846)
Genome browser
AA seq
307 aa
AA seq
DB search
MINVVAVWLVALCFQAAVAQTTNLNLPPEDLDSSGDEDDAFSGSGAGPLTDQSRTWRILE
ESINSSVVAAPVDFSEQPFPGIESRTEKEVISPFATSNVVTEEPVVAVKDEVSILGSPDG
KPTSYVVTTTVRSPTAHVPSLVHVTPSGASAVVHEPQLPSSDVPDTKGMPEPHPTAHGEG
DVAATPAATAPKDAVPTREEVSEDGSGDPGDFILTKEEDSVPTQNSEVLADSERNAKAAG
ASGIMDRKEVLGGVIAGGLVGLVFAVFLVAFMLYRMKKKDEGSYSLDEPKQSNGGYQKPH
KQEEFYA
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgataaacgtggtggccgtgtggctggtggccctttgcttccaggctgctgtcgcgcaa
actacaaatctgaaccttccccctgaagacctggattcatctggtgatgaagatgatgca
ttctcaggctcaggtgcaggtcctctgaccgaccagtctcgcacctggagaatcctagaa
gaatcaattaattcctcagtagtggcagcaccagtggatttcagtgaacagccatttcct
gggattgagagcagaactgaaaaagaagtaatatctccttttgcaaccagtaatgtggtg
acagaggagccagttgtagctgtgaaggacgaagtatccatcctgggctcccctgatggg
aaaccaacaagttacgtggtcacaacaacagtgagaagccccactgctcacgtcccttcc
ctggttcatgtgactccttcaggagcctctgctgtggtccatgaacctcagctgcccagc
tctgatgtgccagacaccaaggggatgcctgagccccaccctactgcccatggggaggga
gatgtcgctgccacccccgcagccacagctccaaaggatgctgttcccacacgtgaggag
gtttctgaagatggctctggagacccgggagacttcatcctgactaaagaggaggattct
gtccccacccagaactcagaagtactggctgactctgagaggaatgccaaagcagcagga
gcctcgggaattatggacagaaaagaagttcttggaggtgttattgctggaggacttgta
ggcttggtgtttgctgtgtttctagttgcatttatgctgtacagaatgaagaaaaaagat
gaaggcagctattcactggatgaaccaaaacagtctaacggaggataccaaaaaccacac
aaacaagaggaattctatgcataa
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