Ficedula albicollis (collared flycatcher): 101816299
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Entry
101816299 CDS
T02815
Symbol
DROSHA
Name
(RefSeq) drosha ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101816299 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101816299 (DROSHA)
03009 Ribosome biogenesis [BR:
fab03009
]
101816299 (DROSHA)
03036 Chromosome and associated proteins [BR:
fab03036
]
101816299 (DROSHA)
Enzymes [BR:
fab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
101816299 (DROSHA)
Messenger RNA biogenesis [BR:
fab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
101816299 (DROSHA)
Ribosome biogenesis [BR:
fab03009
]
Eukaryotic type
90S particles
RNase
101816299 (DROSHA)
Prokaryotic type
rRNA processing factors
101816299 (DROSHA)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
101816299 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
101816299
NCBI-ProteinID:
XP_016152107
LinkDB
All DBs
Position
2:73095754..73168509
Genome browser
AA seq
1335 aa
AA seq
DB search
MSFHSGRGCPRGQGGPGARTSAQTYRPQNLRQLHPQQPSVQYQYEQQAAPPAAYSNPPAT
GYMPPRPDFVPYPPPVPPSTQNPISQCPMRPPFPNHQMRQSFPVPPCFPPTPPPVPNPSN
APVPGTAAGQSTFPYMMPPPAVPHPPPPPVMPQQVSYQPVYSAGYSQQSFPPPAFGSYQH
GSGSFPGGAGGSAGSGHFRHAGQFQGEKAPSERRSPDRSKHYEEHRHREHGHGHGDRHRS
AGHGDRRERGRSPDRRRQESSRHRADYDRGRMSPHHRSYERNRERERERHRHRDSRRSPS
PDRSYKKDYKRAGSRSPSRERKRTRWEEDRERWSENQSSSKEKNYTAVKDKESEENASEK
NEEEDEELLKPVWVRCTHSESYYSNDPMDQVGDSTVVGTSKLRDLYEKFDEELGKRQAKA
KAARPPWEPPKTKLDEDLESSSESECDSEDDSSCSSSSDSDVIDVIAEIKRKKAHPDRLH
EELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPMTNNAGRLYHYRITVS
PPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPEN
FCVRGLELFSSYLFKDILELYDWNLKGPSLENDSVSCPRYHFMPRFVRFLPDGGKEVLSM
HQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLDR
EQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKLS
QREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMHL
DKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHIHMRK
KGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATY
RTAIVQNQHLAMLAKKLELERFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEE
AKQLFGRLLFNEKDLRDVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIFT
HVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRS
SLVNNRTQAKVAEELGMQEFAITNDKTKRPVTLRTKTLADLLESFIAALYIDKDLEYVHT
FMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYT
VAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKELRWER
EHQERESEETEEARK
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattccgggcgaggatgtccccgtggccaggggggaccaggagcacgaact
tcagcacagacctaccgccctcagaacctgcggcagcttcacccgcagcagccctccgtg
cagtaccagtatgagcagcaagctgcgcctcccgcagcctactccaaccctccagccacc
ggttacatgccgcccaggccagacttcgtgccctaccctcctccagtgcccccttccaca
caaaatcccatcagccagtgtcccatgcggccaccgtttccaaaccatcagatgaggcag
agcttcccagtgcccccgtgtttccctcccactcctccaccagtgccaaatcctagcaac
gctcccgtgccaggaacagctgccgggcagagcacctttccgtacatgatgccccccccc
gcggtgccgcaccctcccccgcccccagtcatgccgcagcaggtcagctaccagcccgtg
tactcggcgggctactcgcagcagtccttccctccgcccgccttcggcagctaccagcac
ggctccggctccttccccggcggcgccggcggcagcgccggcagcggccacttccggcac
gcggggcagttccagggagagaaggcgccgagcgagcggcgctccccggaccgcagcaag
cactacgaggagcaccggcaccgcgagcacggccacgggcacggcgaccggcatcgctcc
gccggccacggcgaccggcgggagcgcggccgcagccccgacaggaggaggcaggagagc
agtcggcaccgcgcggattatgacagagggaggatgtcgcctcatcacagaagttacgag
agaaacagggagcgggagagggagaggcatcggcaccgtgacagcagaagatcaccatca
ccagacagatcctacaagaaggattacaagagagcaggaagccggtctccaagcagagag
agaaagagaacccgatgggaggaggacagagaaaggtggtctgagaaccagagctccagt
aaagagaaaaattatactgctgtcaaagacaaagaatcagaagagaatgcttctgagaaa
aatgaagaggaagatgaggaattgcttaagccagtctgggttcgctgtacccattctgaa
agctattattccaatgaccctatggatcaagtgggagactctactgtggtaggaacaagc
aagctccgggatctgtacgaaaagtttgacgaggagttaggaaagcgacaggcaaaggcc
aaagcagccaggccaccatgggagccaccaaaaaccaagctggatgaagatttagagagc
tccagtgagtcagagtgtgactccgaagatgacagcagctgctccagcagttcagattcg
gatgttattgacgtcattgcagaaattaagcgtaaaaaagcacaccctgatcgtctccac
gaagaattgtggtacaatgatcctggacagatgaatgatggacctttgtgcaagtgcagt
gctaaagcccggcgaacaggaataaggcatggcatttatcctggtgaagagcccattaaa
ccatgtcgccccatgaccaacaatgctggaagactataccactaccgaattactgtgtca
cctcccacaaatttcttaacagacagacctactgttattgagtatgatgaccatgaatat
atctttgaagggttctccatgtttgcacatgccccactaacaaacattcctctatgcaaa
gtaatcaggtttaacattgactatacaattcatttcattgaggagatgatgcctgagaat
ttttgtgtgagaggccttgagctattctcttcttatctattcaaagatattttggagttg
tatgactggaatcttaaaggtccttcacttgaaaatgattctgtttcctgtcccagatat
cacttcatgccgcggttcgtgagatttcttccagatggaggaaaagaagtactctcaatg
catcagattcttctctacttgttacgatgcagtaaagctctggtgcctgaagaggagatt
gccaacatgcttcagtgggaagaactggaatggcagaagtatgcagaagaatgcaaaggg
atgatcgttaccagccctggcatgaaacccagctcagttcgtattgatcaactagaccgc
gaacaattcaatcccgatgtaattactttccctattattgtgcactttgggatacgacct
gctcaactcagttatgctggagatcctcaataccaaaagctgtggaagagttatgtgaag
ctgcgtcacctcctggctaacagtcccaaagtcaaacaggctgataaacagaaattatca
caaagagaggaagcactgcagaaaattcgtcagaagaacacaatgaggcgtgaagtgact
gtggagttgagcagccagggattctggaaaacagggatacgctccgatgtctgccagcat
gcaatgatgcttcctgtcctgacccaccatgtgcgctaccatcagtgtctgatgcacttg
gacaaattgataggctacacttttcgagataggtgcttactgcagcttgcaatgactcac
ccaagccatcatttaaactttgggatgaatccggatcatgccagaaattccttatccaac
tgtgggattcgacagcccaagtatggagatagaaaagttcaccatatacacatgagaaaa
aaagggataaacaccctgataaatattatgtcccgtttgggacaggatgatccagctcct
tccaggattaaccacaatgagcgtttagaatttctgggagatgctgtggtggagttctta
acaagtgtccacttatactacctgtttcccactctggaggaaggagggctagctacgtac
cgcactgccattgtgcagaaccagcacctggccatgctggctaagaagctggaactggaa
cgattcatgctctatgctcacggcccagacctttgcagggagtcagatctccgccatgcc
atggccaactgctttgaagccctaataggagctgtttatctagagggaagcctagaagaa
gcaaaacaattatttggacgtttgctcttcaatgaaaaggacctgcgggatgtatggctt
aattatccactacacccactccaactgcaggagtccaatactgacaggcaactcattgag
acctctccagttcttcaaaagcttacagagtttgaggaggcaattggagtcatctttact
cacgttcggcttctggcacgtgcattcactctgaggacagtaggctttaaccatctgact
ctaggccacaaccagaggatggaattcctgggtgattctataatgcagttggtagccaca
gagtatttattcatacatttccccgatcatcatgaagggcacttaacgctgctgagaagt
tctttggtgaacaataggacacaggccaaggtggcagaagagctgggcatgcaagagttt
gccatcactaacgacaagacaaaaagacctgtaactcttcgaactaagactttggctgat
ctcttggaatcctttattgctgccctctacattgataaagatttggaatacgttcacact
ttcatgaatgtttgcttttttccacggctaaaggagtttattttaaatcaagattggaat
gatcctaaatctcagcttcagcagtgctgcttgactctcaggacagaaggaaaagagcca
gacattcctctttacaagaccttgcagacagtgggaccttctcatgccaggacatacaca
gttgctgtgtacttcaaaggggaaagaataggatgtggtaaaggtccaagtattcagcaa
gcagaaatgggagctgcaatggacgcacttgaaaaatataactttccccagatggcccat
cagaaacggttcattgaacggaagtacagacaagagttgaaagagttgaggtgggaaaga
gagcatcaagagagagagtcagaggagactgaagaagcaaggaaataa
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integrated database retrieval system
