Ficedula albicollis (collared flycatcher): 101816374
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Entry
101816374 CDS
T02815
Symbol
TRUB1
Name
(RefSeq) TruB pseudouridine synthase family member 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fab03016
]
101816374 (TRUB1)
Enzymes [BR:
fab01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
101816374 (TRUB1)
Transfer RNA biogenesis [BR:
fab03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
101816374 (TRUB1)
Prokaryotic type
101816374 (TRUB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DMA
Pus10_C
Motif
Other DBs
NCBI-GeneID:
101816374
NCBI-ProteinID:
XP_005048877
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All DBs
Position
6:29154522..29185131
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AA seq
274 aa
AA seq
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MMGCETTFTTGRLWQAPVATQGGAGQAGVQTNGKKRNQVLKIGHGGTLDSAATGVLVVGI
GKGTKMLGTMLSGSKKYTAIGMLGKATDTLDATGKVTEEKPYDQVTKGDLENVLQKFTGD
IMQVPPLYSALKKDGERLSTLMKRGEAVEAKPARPVRVYSLSLQQFQPPLFTLDVECGGG
FYVRSLVNDIGKELSTCATVQELTRTKQGPFTLEEHALQEDKWTIDEIAQSLEHCTALLL
GEPARKKLKTEHPGETAVVCGISDKLGQGKRLND
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgatgggctgtgagaccacgttcaccacaggccgcttgtggcaggcacctgttgccacc
caaggtggagcaggacaagctggtgtgcaaacaaacgggaagaaaagaaatcaggttttg
aaaattggacatggaggaactttggacagtgcagctacaggagttctggtggttggtatt
ggaaaaggaacaaaaatgctgggaactatgttgtcaggttccaagaagtacactgccatt
ggaatgctgggcaaggctactgatacattagatgctacaggaaaagtaactgaagaaaaa
ccttatgaccaggtaacaaaaggagatcttgaaaatgttctgcaaaagttcacaggggac
atcatgcaagttcccccactctattctgctttgaagaaggatggagaaaggctttcaact
ctgatgaagagaggggaagccgtggaagcaaagcctgctcggccagtgagagtgtacagc
ctttctctgcagcagttccagccaccactgttcacactggatgttgaatgtggtggtggc
ttttatgtcaggagcctggtcaatgacattggcaaagagctctccacctgtgccacggtg
caggagctgacccgcaccaagcaggggccgttcacgctggaggagcacgccctgcaggaa
gacaagtggacaattgatgaaattgctcagtccttggagcactgcacagccctgctcctg
ggagagccagctcggaaaaaattgaagacagagcatcctggtgaaactgctgtggtctgt
gggataagtgataagttgggtcaaggaaaaagactgaatgattga
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